Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   P1837_RS05025 Genome accession   NZ_CP121295
Coordinates   1056662..1057642 (+) Length   326 a.a.
NCBI ID   WP_001055651.1    Uniprot ID   -
Organism   Salmonella enterica subsp. enterica strain KKP 998     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1051662..1062642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1837_RS04995 (P1837_04995) - 1052239..1053246 (+) 1008 WP_076737399.1 DUF1202 family protein -
  P1837_RS05000 (P1837_05000) hemW 1053338..1054474 (-) 1137 WP_001096530.1 radical SAM family heme chaperone HemW -
  P1837_RS05005 (P1837_05005) - 1054467..1055060 (-) 594 WP_001174769.1 XTP/dITP diphosphatase -
  P1837_RS05010 (P1837_05010) yggU 1055068..1055358 (-) 291 WP_001277203.1 DUF167 family protein YggU -
  P1837_RS05015 (P1837_05015) - 1055355..1055921 (-) 567 WP_001094848.1 YggT family protein -
  P1837_RS05020 (P1837_05020) - 1055940..1056644 (-) 705 WP_000997790.1 YggS family pyridoxal phosphate-dependent enzyme -
  P1837_RS05025 (P1837_05025) pilT 1056662..1057642 (+) 981 WP_001055651.1 type IV pilus twitching motility protein PilT Machinery gene
  P1837_RS05030 (P1837_05030) - 1057774..1058460 (+) 687 WP_000098325.1 IclR family transcriptional regulator -
  P1837_RS05035 (P1837_05035) ruvX 1058507..1058923 (-) 417 WP_001285491.1 Holliday junction resolvase RuvX -
  P1837_RS05040 (P1837_05040) - 1058923..1059486 (-) 564 WP_001053171.1 YqgE/AlgH family protein -
  P1837_RS05045 (P1837_05045) gshB 1059702..1060649 (-) 948 WP_076737398.1 glutathione synthase -
  P1837_RS05050 (P1837_05050) rsmE 1060669..1061400 (-) 732 WP_001800534.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  P1837_RS05055 (P1837_05055) endA 1061477..1062184 (-) 708 WP_000286124.1 deoxyribonuclease I -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36166.42 Da        Isoelectric Point: 8.1066

>NTDB_id=811645 P1837_RS05025 WP_001055651.1 1056662..1057642(+) (pilT) [Salmonella enterica subsp. enterica strain KKP 998]
MNMEEIVTLSVKHNVSDLHLCNAWPARWRKQGRMETAPFTAPDVDRLLLDWLNDAQQYQWRKHGQLDFAVSLSGTRRLRA
SAFKHQQGTSLALRLLPERCPDLAEIQTPPIVPALLASENGLILVTGATGCGKSTTLAAMVGHLNQHADKHILTLEDPIE
YRYTSKRCLIQQREIGQHCATFAAGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKEPVRSQLAGSLRAVLSQKLEVDRQDGRVALFELLINTPATGNLIREGKLHQLAHVIQTGQQQGMMTFAQSAQWR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=811645 P1837_RS05025 WP_001055651.1 1056662..1057642(+) (pilT) [Salmonella enterica subsp. enterica strain KKP 998]
ATGAATATGGAAGAAATTGTGACGCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGTAACGCATGGCCTGCGCG
ATGGCGCAAACAAGGACGCATGGAGACCGCGCCTTTTACCGCGCCTGATGTCGACAGGCTTCTGCTTGATTGGCTTAATG
ACGCGCAACAATATCAGTGGCGAAAGCACGGCCAGCTTGATTTCGCCGTCTCGCTGTCTGGCACGCGGCGCTTGCGCGCC
AGTGCGTTCAAACATCAACAGGGAACGTCGCTGGCGCTACGGCTATTGCCCGAGCGTTGTCCTGATCTGGCGGAAATCCA
GACGCCGCCGATAGTACCCGCACTGCTTGCCAGCGAGAACGGACTGATTCTGGTCACTGGCGCCACTGGCTGCGGGAAAT
CCACTACGCTGGCGGCGATGGTGGGACATCTTAATCAACATGCCGATAAACACATCCTGACGCTGGAAGATCCTATTGAG
TACCGTTACACCAGCAAGCGTTGCCTGATACAGCAGCGGGAAATCGGCCAGCATTGCGCCACTTTTGCCGCCGGGCTGCG
CGCGGCGTTGCGTGAAGATCCCGATGTCATTTTACTGGGAGAGCTGCGTGACAGCGAGACCATTCGCCTGGCGCTGACGG
CGGCGGAAACGGGGCATCTGGTACTGGCAACCCTGCATACTCGTGGCGCGGCGCAGGCGGTGGAAAGATTAGTGGATAGT
TTTCCGGCGCAGGAAAAAGAACCGGTACGCAGTCAACTGGCGGGTAGTCTGCGCGCTGTACTATCGCAAAAACTGGAGGT
CGACAGACAAGATGGGCGCGTGGCGTTGTTTGAATTACTGATTAATACGCCAGCCACAGGGAATTTGATCCGTGAAGGCA
AACTCCATCAGTTGGCCCACGTGATACAAACCGGGCAGCAGCAGGGGATGATGACATTCGCCCAGAGCGCGCAATGGCGT
CAGGCGCAGGGACGACTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(77-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

48.624

100

0.488
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.624

100

0.488
  pilT Neisseria meningitidis 8013

47.256

100

0.475
  pilT Neisseria gonorrhoeae MS11

46.951

100

0.472
  pilT Acinetobacter baylyi ADP1

45.26

100

0.454
  pilT Acinetobacter baumannii strain A118

44.954

100

0.451
  pilT Acinetobacter baumannii D1279779

44.954

100

0.451
  pilT Pseudomonas aeruginosa PAK

44.954

100

0.451
  pilT Pseudomonas stutzeri DSM 10701

44.954

100

0.451
  pilT Acinetobacter nosocomialis M2

44.648

100

0.448
  pilT Legionella pneumophila strain Lp02

44.654

97.546

0.436
  pilT Legionella pneumophila strain ERS1305867

44.654

97.546

0.436
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

38.558

97.853

0.377
  pilU Pseudomonas stutzeri DSM 10701

35.65

100

0.362