Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   PZO51_RS18390 Genome accession   NZ_CP119170
Coordinates   3927429..3928409 (-) Length   326 a.a.
NCBI ID   WP_303569214.1    Uniprot ID   -
Organism   Enterobacter mori strain LgD10     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3922429..3933409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZO51_RS18360 (PZO51_18360) - 3923318..3923815 (+) 498 WP_010435446.1 SprT family zinc-dependent metalloprotease -
  PZO51_RS18365 (PZO51_18365) endA 3923910..3924617 (+) 708 WP_303569213.1 deoxyribonuclease I -
  PZO51_RS18370 (PZO51_18370) rsmE 3924669..3925400 (+) 732 WP_010435451.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  PZO51_RS18375 (PZO51_18375) gshB 3925420..3926367 (+) 948 WP_010435454.1 glutathione synthase -
  PZO51_RS18380 (PZO51_18380) - 3926442..3927002 (+) 561 WP_010435456.1 YqgE/AlgH family protein -
  PZO51_RS18385 (PZO51_18385) ruvX 3927002..3927418 (+) 417 WP_006811925.1 Holliday junction resolvase RuvX -
  PZO51_RS18390 (PZO51_18390) pilT 3927429..3928409 (-) 981 WP_303569214.1 type IV pilus twitching motility protein PilT Machinery gene
  PZO51_RS18395 (PZO51_18395) - 3928427..3929128 (+) 702 WP_237844828.1 YggS family pyridoxal phosphate-dependent enzyme -
  PZO51_RS18400 (PZO51_18400) - 3929150..3929716 (+) 567 WP_010435467.1 YggT family protein -
  PZO51_RS18405 (PZO51_18405) yggU 3929713..3930009 (+) 297 WP_010435470.1 DUF167 family protein YggU -
  PZO51_RS18410 (PZO51_18410) - 3930013..3930606 (+) 594 WP_010435473.1 XTP/dITP diphosphatase -
  PZO51_RS18415 (PZO51_18415) hemW 3930599..3931741 (+) 1143 WP_010435478.1 radical SAM family heme chaperone HemW -
  PZO51_RS18420 (PZO51_18420) - 3931805..3932143 (+) 339 WP_172699215.1 endonuclease domain-containing protein -
  PZO51_RS18425 (PZO51_18425) - 3932225..3932941 (-) 717 WP_042714747.1 DUF2884 domain-containing protein -
  PZO51_RS18430 (PZO51_18430) - 3932999..3933325 (-) 327 WP_010435485.1 YggL family protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35634.67 Da        Isoelectric Point: 6.0399

>NTDB_id=798011 PZO51_RS18390 WP_303569214.1 3927429..3928409(-) (pilT) [Enterobacter mori strain LgD10]
MDVEEIVALSVKHNVSDLHLCSDSPPRWRRLGRLEPAPFPAPDVEALLKTWLNDEQQGAWWANGQVDFAVTLTGNQRLRG
SAFTHMKGVSIALRLLPLACPQLSALGVPRAIPELLSSESGLILVTGATGSGKSTTLAAMVDFLNHHTDGHIMTLEDPVE
FMYQSERCLIQQREIGQHSLSFAEALRSALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGASQAIERLVDT
FPAQEKDPVRNQLAGSLRAVLAQKLLQDVQGGRVALYELLVNTSAAANLIREGKTWQLPGIIQTGQQAGMQNFEQSLAER
RAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=798011 PZO51_RS18390 WP_303569214.1 3927429..3928409(-) (pilT) [Enterobacter mori strain LgD10]
ATGGATGTGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCCGATCTACACCTGTGCAGTGATTCACCGCCGCG
CTGGCGCAGATTAGGCCGCCTTGAACCGGCCCCGTTTCCGGCCCCCGACGTTGAGGCGCTATTAAAAACCTGGCTCAACG
ATGAACAGCAGGGCGCGTGGTGGGCAAACGGACAGGTAGACTTTGCCGTCACGCTCACAGGCAATCAGCGTCTTCGCGGC
AGTGCGTTTACGCATATGAAGGGTGTGTCGATCGCCTTGCGACTGTTGCCGCTCGCGTGCCCGCAGCTTTCTGCACTGGG
TGTGCCCAGGGCTATCCCGGAACTGCTCTCCAGCGAAAGCGGGTTGATTCTGGTGACGGGTGCGACCGGTAGCGGAAAAT
CCACGACGCTCGCGGCGATGGTGGATTTTCTCAACCATCACACTGACGGCCATATTATGACGCTCGAAGATCCGGTGGAG
TTTATGTACCAGAGTGAACGCTGCCTGATACAGCAGCGGGAGATTGGTCAGCACAGTCTCTCCTTTGCCGAGGCGCTGCG
CAGTGCGCTGCGCGAAGATCCGGACGTTATTCTGTTGGGAGAGCTGCGCGACAGCGAAACCATCCGCCTTGCGCTGACGG
CGGCCGAAACCGGGCACCTGGTGCTGGCGACGCTGCATACGCGCGGCGCTTCGCAGGCGATTGAACGGCTGGTGGATACC
TTCCCGGCGCAGGAGAAAGATCCGGTGCGTAACCAGCTGGCAGGCAGCCTTCGCGCTGTACTGGCGCAAAAACTGCTCCA
GGACGTGCAGGGCGGGCGCGTGGCGCTTTATGAACTGCTGGTGAACACCTCGGCGGCGGCGAATCTCATTCGTGAAGGGA
AAACGTGGCAATTACCCGGCATCATACAAACCGGTCAGCAGGCGGGAATGCAGAACTTTGAGCAGAGTCTCGCGGAAAGG
CGGGCGCAGGGGCGGCTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(89-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

50.765

100

0.509
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.765

100

0.509
  pilT Pseudomonas stutzeri DSM 10701

48.318

100

0.485
  pilT Neisseria meningitidis 8013

47.866

100

0.482
  pilT Neisseria gonorrhoeae MS11

47.561

100

0.479
  pilT Legionella pneumophila strain ERS1305867

48.447

98.773

0.479
  pilT Legionella pneumophila strain Lp02

48.447

98.773

0.479
  pilT Acinetobacter baylyi ADP1

47.401

100

0.475
  pilT Acinetobacter baumannii strain A118

47.095

100

0.472
  pilT Acinetobacter baumannii D1279779

47.095

100

0.472
  pilT Pseudomonas aeruginosa PAK

46.789

100

0.469
  pilT Acinetobacter nosocomialis M2

47.5

98.16

0.466
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.547

98.773

0.42
  pilU Pseudomonas stutzeri DSM 10701

37.879

100

0.383
  pilU Vibrio cholerae strain A1552

37.888

98.773

0.374