Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   PWW24_RS16780 Genome accession   NZ_CP118590
Coordinates   3533966..3535006 (-) Length   346 a.a.
NCBI ID   WP_005425810.1    Uniprot ID   A0A9X3MNX0
Organism   Vibrio harveyi strain fish12     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3528966..3540006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW24_RS16750 endA 3529062..3529757 (+) 696 WP_005449743.1 deoxyribonuclease I -
  PWW24_RS16755 rsmE 3529904..3530635 (+) 732 WP_005449742.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  PWW24_RS16760 gshB 3530650..3531600 (+) 951 WP_005449741.1 glutathione synthase -
  PWW24_RS16765 - 3531730..3532293 (+) 564 WP_050940663.1 YqgE/AlgH family protein -
  PWW24_RS16770 ruvX 3532343..3532768 (+) 426 WP_005449738.1 Holliday junction resolvase RuvX -
  PWW24_RS16775 pilU 3532828..3533934 (-) 1107 WP_005449736.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  PWW24_RS16780 pilT 3533966..3535006 (-) 1041 WP_005425810.1 type IV pilus twitching motility protein PilT Machinery gene
  PWW24_RS16785 - 3535035..3535745 (+) 711 WP_009697582.1 YggS family pyridoxal phosphate-dependent enzyme -
  PWW24_RS16790 proC 3535877..3536695 (+) 819 WP_274792429.1 pyrroline-5-carboxylate reductase -
  PWW24_RS16795 - 3536749..3537306 (+) 558 WP_010450350.1 YggT family protein -
  PWW24_RS16800 yggU 3537306..3537596 (+) 291 WP_005425805.1 DUF167 family protein YggU -
  PWW24_RS16805 - 3537772..3538023 (+) 252 WP_005449728.1 hypothetical protein -
  PWW24_RS16810 - 3538072..3538398 (-) 327 WP_005449725.1 hypothetical protein -
  PWW24_RS16815 - 3538468..3538623 (-) 156 WP_005449723.1 hypothetical protein -
  PWW24_RS16820 - 3538616..3538816 (-) 201 WP_005449722.1 hypothetical protein -
  PWW24_RS16825 - 3538914..3539396 (-) 483 WP_274884731.1 structural protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 38634.12 Da        Isoelectric Point: 6.5043

>NTDB_id=793768 PWW24_RS16780 WP_005425810.1 3533966..3535006(-) (pilT) [Vibrio harveyi strain fish12]
MDITELLDFSVKHNASDLHLSAGVPPMVRIDGDVRKLGIPAFTHQEVHRLVFEIMNDAQRSEFEEKLEVDFSFELHNVGR
FRVNAFNQSRGCAAVFRTIPSSIPTLEELEAPEIFRKIANAEKGLVLVTGPTGSGKSTTLAAIVDYINRNHNKHVLTIED
PIEFVHTNNKCLINQREVHRDTHSFQNALRSALREDPDVILVGEMRDKETISLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPGSDKDMVRSMLSESLRSVIAQKLLKRNGGGRIACHEIMMATPAIRNLIREDKVAQMYSIIQTGAAHGMQTMEQNA
RQLMAQGMVSREEVDKKVEIEAQQFS

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=793768 PWW24_RS16780 WP_005425810.1 3533966..3535006(-) (pilT) [Vibrio harveyi strain fish12]
ATGGATATCACTGAGTTACTGGATTTTAGTGTAAAACATAATGCTTCGGATCTACATCTTTCTGCAGGTGTACCACCAAT
GGTTCGTATTGATGGTGATGTAAGAAAGCTGGGCATTCCAGCGTTTACACACCAAGAAGTGCATCGTTTGGTTTTTGAAA
TCATGAACGATGCGCAGCGCAGTGAGTTCGAAGAAAAACTCGAAGTCGATTTTTCATTTGAATTGCATAACGTTGGCCGT
TTTCGTGTCAACGCTTTCAACCAATCTCGCGGTTGTGCGGCTGTGTTCCGTACCATCCCAAGTAGCATTCCAACACTGGA
AGAGCTAGAAGCCCCTGAGATCTTCAGAAAGATTGCCAATGCTGAAAAAGGCCTGGTACTGGTTACCGGTCCAACGGGTT
CTGGTAAATCGACTACCTTGGCAGCCATTGTTGACTACATTAACCGTAATCACAATAAGCACGTCCTAACAATTGAAGAT
CCGATTGAATTTGTTCACACCAACAATAAGTGTCTGATCAACCAACGTGAAGTACACCGTGATACACACAGCTTCCAAAA
CGCACTGCGCAGCGCATTACGTGAAGACCCGGATGTGATTCTAGTTGGTGAGATGCGTGATAAAGAAACCATCAGTTTGG
CGCTGACGGCTGCTGAAACGGGTCACCTTGTTTTCGGTACGCTGCACACTAGCTCAGCAGCGAAAACCATCGACCGTATT
ATCGACGTATTCCCAGGTAGTGACAAAGACATGGTGCGTTCGATGCTGTCGGAGTCGCTGCGTTCGGTTATTGCACAAAA
ACTGTTAAAACGTAATGGTGGTGGTCGTATTGCTTGTCATGAAATCATGATGGCGACGCCTGCGATCCGTAACCTTATTC
GTGAAGACAAAGTCGCGCAGATGTATTCGATCATTCAGACCGGTGCGGCGCATGGCATGCAGACCATGGAGCAGAATGCT
CGTCAATTGATGGCACAAGGCATGGTATCGCGTGAAGAAGTGGATAAGAAAGTTGAAATTGAAGCGCAGCAATTCTCGTA
A

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

86.377

99.711

0.861
  pilT Vibrio cholerae strain A1552

86.377

99.711

0.861
  pilT Acinetobacter baumannii D1279779

72.121

95.376

0.688
  pilT Acinetobacter baumannii strain A118

72.121

95.376

0.688
  pilT Acinetobacter nosocomialis M2

71.818

95.376

0.685
  pilT Acinetobacter baylyi ADP1

71.515

95.376

0.682
  pilT Pseudomonas aeruginosa PAK

68.824

98.266

0.676
  pilT Pseudomonas stutzeri DSM 10701

69.027

97.977

0.676
  pilT Legionella pneumophila strain Lp02

67.674

95.665

0.647
  pilT Legionella pneumophila strain ERS1305867

67.674

95.665

0.647
  pilT Neisseria meningitidis 8013

64.118

98.266

0.63
  pilT Neisseria gonorrhoeae MS11

63.824

98.266

0.627
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.857

100

0.503
  pilU Vibrio cholerae strain A1552

41.617

96.532

0.402
  pilU Pseudomonas stutzeri DSM 10701

40.419

96.532

0.39