Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   LNGFDJGK_RS17790 Genome accession   NZ_CP118279
Coordinates   3737276..3738256 (-) Length   326 a.a.
NCBI ID   WP_003860028.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain LG3     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3732276..3743256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNGFDJGK_RS17760 (LNGFDJGK_03517) - 3733153..3733650 (+) 498 WP_003860035.1 SprT family zinc-dependent metalloprotease -
  LNGFDJGK_RS17765 (LNGFDJGK_03518) endA 3733745..3734452 (+) 708 WP_003860034.1 deoxyribonuclease I -
  LNGFDJGK_RS17770 (LNGFDJGK_03519) rsmE 3734504..3735235 (+) 732 WP_003860033.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  LNGFDJGK_RS17775 (LNGFDJGK_03520) gshB 3735267..3736214 (+) 948 WP_003860032.1 glutathione synthase -
  LNGFDJGK_RS17780 (LNGFDJGK_03521) - 3736289..3736849 (+) 561 WP_003860031.1 YqgE/AlgH family protein -
  LNGFDJGK_RS17785 (LNGFDJGK_03522) ruvX 3736849..3737265 (+) 417 WP_003860030.1 Holliday junction resolvase RuvX -
  LNGFDJGK_RS17790 (LNGFDJGK_03523) pilT 3737276..3738256 (-) 981 WP_003860028.1 type IV pilus twitching motility protein PilT Machinery gene
  LNGFDJGK_RS17795 (LNGFDJGK_03524) - 3738274..3738972 (+) 699 WP_023314824.1 YggS family pyridoxal phosphate-dependent enzyme -
  LNGFDJGK_RS17800 (LNGFDJGK_03525) - 3738997..3739563 (+) 567 WP_045337265.1 YggT family protein -
  LNGFDJGK_RS17805 (LNGFDJGK_03526) yggU 3739560..3739856 (+) 297 WP_003860023.1 DUF167 family protein YggU -
  LNGFDJGK_RS17810 (LNGFDJGK_03527) - 3739860..3740453 (+) 594 WP_022651831.1 XTP/dITP diphosphatase -
  LNGFDJGK_RS17815 (LNGFDJGK_03528) hemW 3740446..3741594 (+) 1149 WP_003860019.1 radical SAM family heme chaperone HemW -
  LNGFDJGK_RS17820 - 3741651..3742013 (+) 363 WP_045337264.1 DUF559 domain-containing protein -
  LNGFDJGK_RS17825 (LNGFDJGK_03529) - 3742126..3742842 (-) 717 WP_003862419.1 DUF2884 domain-containing protein -
  LNGFDJGK_RS17830 (LNGFDJGK_03530) - 3742900..3743226 (-) 327 WP_003862421.1 YggL family protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35622.60 Da        Isoelectric Point: 6.2335

>NTDB_id=791438 LNGFDJGK_RS17790 WP_003860028.1 3737276..3738256(-) (pilT) [Enterobacter hormaechei strain LG3]
MDVEEIVALSVKHNVSDLHLCSDSPPRWRRSGRLEPAPFPPPDVEALLKAWLNDEQQGAWWANGQVDFAVTLTGGQRLRG
SAFKHMHGVSIALRLLPLTCPQLSALGVPRAIPELLSNDNGLILVTGATGSGKSTTLAAMVDFLNHQTDGHILTLEDPVE
FMYQSERCLIQQREIGLHSPSFAEALRSALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAIERLVDT
FPAQEKDPVRNQLAGSLRAVLAQKLRQDVQGGRVALYELLVNTSAAANLIREGKTWQLPGIIQTGQQAGMQNFEQSLAER
RAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=791438 LNGFDJGK_RS17790 WP_003860028.1 3737276..3738256(-) (pilT) [Enterobacter hormaechei strain LG3]
ATGGATGTGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCCGATCTACACCTGTGCAGTGATTCACCACCGCG
CTGGCGCAGGTCAGGCCGTCTTGAACCTGCGCCGTTTCCGCCCCCGGATGTGGAGGCATTATTAAAAGCGTGGCTCAATG
ACGAACAGCAGGGCGCCTGGTGGGCAAACGGGCAGGTGGATTTTGCCGTTACCCTCACAGGCGGTCAGCGGCTGCGCGGC
AGTGCGTTTAAGCATATGCACGGCGTTTCGATCGCGCTGCGCCTGTTGCCGCTGACGTGCCCGCAGCTCTCTGCGTTAGG
CGTGCCGCGCGCGATCCCGGAGCTTTTGTCCAATGACAATGGCCTGATTCTGGTCACCGGCGCCACCGGCAGCGGGAAAT
CGACCACTCTGGCCGCGATGGTCGATTTCCTCAATCACCAGACGGACGGGCATATTCTGACCCTGGAAGATCCGGTGGAG
TTTATGTACCAGAGTGAACGTTGCCTGATCCAGCAGCGGGAGATAGGCCTGCACAGCCCGTCCTTTGCCGAGGCCCTGCG
CAGCGCTCTGCGTGAAGATCCGGATGTGATTCTGCTTGGTGAGCTGCGCGACAGCGAGACGATACGCCTGGCGCTGACGG
CGGCGGAAACCGGCCATCTGGTGTTGGCCACGCTGCACACGCGCGGTGCGGCGCAGGCGATCGAGCGCCTGGTCGACACC
TTTCCGGCGCAGGAGAAAGATCCGGTGCGTAATCAACTGGCGGGAAGCCTGCGTGCGGTTCTGGCGCAGAAGCTGCGTCA
GGATGTCCAGGGCGGGCGCGTGGCGCTGTATGAGCTACTGGTGAATACGTCGGCGGCGGCAAACCTGATCCGCGAAGGCA
AAACCTGGCAACTGCCGGGCATTATTCAAACGGGGCAGCAGGCGGGGATGCAGAACTTTGAGCAGAGTCTGGCGGAGCGA
CGGGCGCAGGGGCGGCTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(75-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

50.459

100

0.506
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.459

100

0.506
  pilT Pseudomonas stutzeri DSM 10701

48.012

100

0.482
  pilT Legionella pneumophila strain Lp02

48.447

98.773

0.479
  pilT Legionella pneumophila strain ERS1305867

48.447

98.773

0.479
  pilT Neisseria meningitidis 8013

47.256

100

0.475
  pilT Acinetobacter baumannii D1279779

47.095

100

0.472
  pilT Acinetobacter baumannii strain A118

47.095

100

0.472
  pilT Pseudomonas aeruginosa PAK

47.095

100

0.472
  pilT Neisseria gonorrhoeae MS11

46.951

100

0.472
  pilT Acinetobacter baylyi ADP1

46.789

100

0.469
  pilT Acinetobacter nosocomialis M2

47.5

98.16

0.466
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.344

99.08

0.429
  pilU Pseudomonas stutzeri DSM 10701

38.182

100

0.387
  pilU Vibrio cholerae strain A1552

38.509

98.773

0.38