Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OG328_RS36175 Genome accession   NZ_CP130730
Coordinates   7898969..7900102 (+) Length   377 a.a.
NCBI ID   WP_405844897.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01518     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7893969..7905102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG328_RS36145 (OG328_36045) - 7894083..7895027 (-) 945 WP_405844889.1 hypothetical protein -
  OG328_RS36150 (OG328_36050) - 7895108..7895302 (+) 195 WP_405844891.1 DUF3046 domain-containing protein -
  OG328_RS36155 (OG328_36055) - 7895489..7896805 (+) 1317 WP_405849577.1 AI-2E family transporter -
  OG328_RS36160 (OG328_36060) - 7896840..7897586 (-) 747 WP_405844893.1 hypothetical protein -
  OG328_RS36165 (OG328_36065) - 7897766..7898377 (+) 612 WP_405844895.1 dihydrofolate reductase family protein -
  OG328_RS36170 (OG328_36070) - 7898430..7898633 (-) 204 WP_033286174.1 hypothetical protein -
  OG328_RS36175 (OG328_36075) recA 7898969..7900102 (+) 1134 WP_405844897.1 recombinase RecA Machinery gene
  OG328_RS36180 (OG328_36080) recX 7900106..7901083 (+) 978 WP_405844899.1 recombination regulator RecX -
  OG328_RS36185 (OG328_36085) - 7901282..7901686 (+) 405 WP_405844901.1 winged helix-turn-helix domain-containing protein -
  OG328_RS36190 (OG328_36090) - 7902002..7902964 (+) 963 WP_405849578.1 sugar ABC transporter substrate-binding protein -
  OG328_RS36195 (OG328_36095) - 7903017..7903418 (-) 402 WP_318019213.1 rhodanese-like domain-containing protein -
  OG328_RS36200 (OG328_36100) - 7903415..7903954 (-) 540 WP_318019214.1 cysteine dioxygenase -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 39952.49 Da        Isoelectric Point: 6.3773

>NTDB_id=787569 OG328_RS36175 WP_405844897.1 7898969..7900102(+) (recA) [Streptomyces sp. NBC_01518]
MAGTDREKALDAALAQIERQFGKGAVMRLGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQRAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITGALHQSGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGHGISREGGLIDMGVENGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKILEKLGVGVRPEKDKPAADAVADGVVTTATDDAAKAVPAPAAAKTTKAKATAAKS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=787569 OG328_RS36175 WP_405844897.1 7898969..7900102(+) (recA) [Streptomyces sp. NBC_01518]
ATGGCAGGAACCGACCGCGAGAAGGCGCTGGACGCCGCGCTCGCACAGATTGAACGGCAATTCGGCAAGGGCGCAGTGAT
GCGCCTCGGCGAGCGGCCGAACGAGCCGATCGAGGTCATCCCCACCGGCTCGACCGCGCTCGACGTCGCCCTCGGTGTCG
GCGGCCTGCCGCGCGGCCGAGTGGTGGAGGTCTACGGCCCGGAGTCCTCCGGCAAGACGACCCTGACCCTGCACGCGGTG
GCGAACGCCCAGCGGGCCGGCGGCCAGGTCGCGTTCGTGGACGCGGAGCACGCCCTCGACCCCGAGTACGCGAAGAAGCT
CGGCGTCGACATCGACAACCTGATCCTGTCCCAGCCGGACAACGGCGAGCAGGCCCTGGAGATCGTGGACATGCTGGTCC
GCTCCGGCGCCCTCGACCTCATCGTCATCGACTCCGTCGCGGCACTCGTCCCGCGCGCGGAGATCGAGGGCGAGATGGGT
GACAGCCACGTCGGTCTGCAGGCCCGTCTGATGAGCCAGGCGCTCCGCAAGATCACCGGCGCGCTCCACCAGTCCGGGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGATGTTCGGCTCCCCGGAGACCACGACCGGTGGCCGCG
CGCTGAAGTTCTACGCCTCGGTGCGACTCGACATCCGTCGTATCGAGACCCTCAAGGACGGCACCGACGCGGTCGGCAAC
CGCACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCACGG
CATCAGCCGCGAGGGCGGCCTGATCGACATGGGCGTGGAGAACGGCTTCGTCCGCAAGGCCGGCGCCTGGTACACGTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCGCGCAACTTCCTCAAGGACAACCCCGACCTGGCCAACGAGATCGAG
AAGAAGATCCTGGAGAAGCTGGGCGTGGGCGTCCGTCCGGAGAAGGACAAGCCCGCTGCTGATGCGGTCGCGGACGGGGT
GGTCACCACCGCCACGGACGACGCCGCGAAGGCGGTGCCCGCTCCGGCCGCGGCCAAGACCACCAAGGCCAAGGCCACGG
CAGCCAAGAGCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.569

90.451

0.602
  recA Vibrio cholerae strain A1552

63.429

92.838

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.429

92.838

0.589
  recA Neisseria gonorrhoeae MS11

68.75

84.881

0.584
  recA Neisseria gonorrhoeae strain FA1090

68.75

84.881

0.584
  recA Bacillus subtilis subsp. subtilis str. 168

66.871

86.472

0.578
  recA Staphylococcus aureus strain ATCC 12600

66.871

86.472

0.578
  recA Acinetobacter baylyi ADP1

67.183

85.676

0.576
  recA Acinetobacter baumannii D1279779

67.183

85.676

0.576
  recA Ralstonia pseudosolanacearum GMI1000

69.329

83.024

0.576
  recA Acinetobacter nosocomialis M2

66.873

85.676

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

62.17

90.451

0.562
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.804

86.472

0.552
  recA Streptococcus thermophilus LMG 18311

58.427

94.43

0.552
  recA Streptococcus thermophilus LMD-9

58.427

94.43

0.552
  recA Helicobacter pylori strain NCTC11637

61.721

89.39

0.552
  recA Helicobacter pylori 26695

61.721

89.39

0.552
  recA Streptococcus pyogenes NZ131

61.818

87.533

0.541
  recA Streptococcus mutans UA159

61.631

87.798

0.541
  recA Glaesserella parasuis strain SC1401

63.043

85.411

0.538
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.398

87.268

0.536
  recA Streptococcus mitis NCTC 12261

60.725

87.798

0.533
  recA Streptococcus mitis SK321

60.725

87.798

0.533
  recA Lactococcus lactis subsp. cremoris KW2

61.846

86.207

0.533
  recA Streptococcus pneumoniae R6

60.423

87.798

0.531
  recA Streptococcus pneumoniae R36A

60.423

87.798

0.531
  recA Streptococcus pneumoniae Rx1

60.423

87.798

0.531
  recA Streptococcus pneumoniae D39

60.423

87.798

0.531
  recA Streptococcus pneumoniae TIGR4

60.423

87.798

0.531
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.104

86.737

0.504