Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   OG328_RS34765 Genome accession   NZ_CP130730
Coordinates   7578489..7580714 (+) Length   741 a.a.
NCBI ID   WP_405844496.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01518     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7573489..7585714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG328_RS34755 (OG328_34660) - 7573552..7576494 (-) 2943 WP_405844493.1 tetratricopeptide repeat protein -
  OG328_RS34760 (OG328_34665) - 7576494..7578320 (-) 1827 WP_405844494.1 HSP90 family protein -
  OG328_RS34765 (OG328_34670) recG 7578489..7580714 (+) 2226 WP_405844496.1 ATP-dependent DNA helicase RecG Machinery gene
  OG328_RS34770 (OG328_34675) rsmD 7580795..7581382 (+) 588 WP_318019056.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  OG328_RS34775 (OG328_34680) coaD 7581409..7581888 (+) 480 WP_405849567.1 pantetheine-phosphate adenylyltransferase -
  OG328_RS34780 (OG328_34685) - 7581988..7583070 (+) 1083 WP_033282674.1 ATP synthase F0 subunit B -
  OG328_RS34785 (OG328_34690) - 7583226..7583879 (+) 654 WP_033282673.1 DUF177 domain-containing protein -
  OG328_RS34790 (OG328_34695) rpmF 7583882..7584055 (+) 174 WP_015657589.1 50S ribosomal protein L32 -
  OG328_RS34795 (OG328_34700) rnc 7584075..7584920 (+) 846 WP_405844500.1 ribonuclease III -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80147.76 Da        Isoelectric Point: 6.3016

>NTDB_id=787568 OG328_RS34765 WP_405844496.1 7578489..7580714(+) (recG) [Streptomyces sp. NBC_01518]
MDLVPALEEPLEQPLKTVLGPATAKVMAEHLGLHTVGDLLHHYPRRYEERGQLTHLAELPMDEHVTVVAQVADARLHSFA
SSKAPRGKGQRLEVTITDGSGRLQLVFFGSGVHKPHKELLPGTRAMFAGKVSVFNRRLQLAHPAYELLKGDAEEAVETWA
GTLIPIYPATAKLESWKIGKALQTALPSAQEAVDPLPDSLREGRGLVSLPEALLKIHRPHTKADIAAARDRLKWDEAFVL
QVALARRRHADAQLPAVARKPSPDGLLSAFDDRLPFTLTDGQVKVSKEIFDDLATEHPMHRLLQGEVGSGKTMVALRAML
AVVDAGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGAERATKVTLLTGSMGTAGRRQALLDLVTGEAGIVIGTHA
LIEDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVV
PAADKPHFLARAWERVREEVSNGHQAYVVCPRIGDEDDDPKKTGKAKKKSPEDEAEKRPPLAVLDIAAQLAKGPLQGLKI
EVLHGRMHPDDKDAVMRRFAAGDTDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAAGLCLLVSEM
PEASPARQRLNAVASTLDGFELSRIDLEQRREGDVLGQAQSGARTSLRVLSVIEDEEVIAEAREEATSVVAADPELTGLP
GLRTALDALLDEEREQYLEKG

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=787568 OG328_RS34765 WP_405844496.1 7578489..7580714(+) (recG) [Streptomyces sp. NBC_01518]
ATGGATCTCGTGCCCGCACTGGAAGAACCACTAGAACAGCCATTGAAAACAGTGCTCGGCCCCGCCACCGCGAAGGTGAT
GGCCGAGCATCTCGGCCTGCACACAGTAGGCGACCTCCTGCACCACTACCCGCGCAGATACGAGGAGCGGGGCCAGCTCA
CGCACCTCGCCGAGCTGCCGATGGACGAGCACGTCACCGTGGTCGCCCAGGTCGCCGACGCCCGCCTGCACTCCTTCGCG
TCCAGCAAGGCCCCCCGGGGCAAGGGCCAGCGCCTCGAAGTCACGATCACGGACGGCAGCGGCCGACTCCAACTCGTCTT
CTTCGGCTCGGGAGTTCACAAACCCCACAAGGAACTCCTGCCGGGCACCCGCGCGATGTTCGCCGGCAAGGTCTCCGTCT
TCAACCGCCGTCTTCAACTCGCCCATCCGGCATACGAGTTGCTGAAGGGCGACGCAGAGGAAGCGGTGGAGACCTGGGCG
GGCACCCTGATCCCCATCTACCCCGCCACCGCCAAACTGGAGTCCTGGAAGATCGGCAAGGCCCTCCAGACGGCACTTCC
CAGCGCCCAGGAAGCCGTGGACCCCCTCCCGGACTCCCTGCGCGAGGGCCGAGGCCTGGTCTCCCTCCCGGAAGCCCTCC
TCAAGATCCACCGCCCCCACACCAAGGCGGACATCGCCGCGGCCCGCGACCGCCTCAAGTGGGACGAGGCCTTCGTCCTC
CAGGTAGCCCTGGCCCGCCGCCGCCACGCGGACGCCCAACTCCCGGCGGTGGCCCGCAAACCGTCCCCGGACGGCCTCCT
CTCCGCCTTCGACGACCGGCTCCCGTTCACCCTCACGGACGGGCAGGTGAAGGTCTCCAAGGAGATCTTCGACGACCTGG
CTACGGAGCATCCGATGCACCGGTTGCTGCAGGGGGAAGTTGGTAGCGGAAAAACAATGGTGGCTCTGCGCGCCATGCTC
GCCGTGGTCGACGCGGGCGGGCAGGCCGCGATGCTCGCGCCCACCGAAGTGCTAGCCCAGCAGCACCACCGCTCCATCAC
CGAGATGATGGGGGAGCTGGCCGAGGGCGGGATGCTGGGCGGAGCCGAGCGGGCGACCAAGGTCACGTTGCTCACGGGTT
CCATGGGGACGGCCGGCCGGCGCCAAGCCCTCCTCGACCTTGTCACCGGCGAGGCCGGGATCGTGATCGGTACGCACGCG
TTGATCGAGGACAAGGTCCAGTTCCACGACCTGGGCCTGGTCGTGGTCGACGAACAGCACCGCTTCGGCGTCGAGCAGCG
CGACGCCCTGCGCGGCAAGGGCAAACAACCTCCGCACCTGCTCGTCATGACCGCCACCCCCATCCCGCGCACGGTCGCCA
TGACGGTCTTCGGCGACCTGGAGACCTCCGTCCTCGACCAACTCCCGGCCGGCCGCTCACCCATCGCCAGCCATGTCGTC
CCCGCAGCCGACAAACCCCACTTCCTGGCCCGTGCCTGGGAGCGCGTCCGCGAGGAGGTCTCCAACGGCCATCAGGCGTA
CGTCGTCTGCCCCCGCATCGGCGACGAGGACGACGACCCCAAGAAGACCGGCAAGGCCAAGAAGAAGTCCCCCGAGGACG
AGGCGGAGAAGCGCCCACCGCTCGCCGTCCTCGACATCGCGGCCCAGCTCGCCAAGGGCCCGCTCCAGGGGCTGAAGATC
GAGGTGCTGCACGGCCGTATGCACCCCGATGACAAGGACGCCGTGATGCGCCGCTTCGCCGCCGGGGACACGGACGTCCT
GGTCGCGACGACGGTCATCGAGGTCGGCGTCAACGTGCCCAACGCCACGGCCATGGTGATCATGGATGCCGATCGCTTCG
GCGTGTCCCAGCTCCACCAGCTCCGGGGCCGGGTCGGTCGTGGCTCGGCAGCCGGCCTCTGCCTCCTGGTCTCCGAAATG
CCCGAGGCCAGCCCCGCCCGCCAACGCCTCAACGCCGTCGCCTCCACCCTCGACGGCTTCGAACTCTCCCGCATCGACCT
CGAACAGCGCCGCGAGGGCGATGTGTTGGGGCAGGCCCAGTCCGGTGCCCGCACTTCCCTCCGGGTCCTGTCGGTCATCG
AGGACGAGGAGGTCATCGCGGAGGCGCGGGAGGAGGCGACGAGTGTGGTGGCAGCCGATCCGGAACTCACGGGGCTTCCT
GGCTTGAGGACTGCCCTGGACGCCCTCTTGGACGAGGAAAGAGAGCAGTACTTGGAGAAGGGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(300-452)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(65-148)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(656-716)

Helicase conserved C-terminal domain (Helicase_C)

(553-628)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.484

94.332

0.363