Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   PQG02_RS01615 Genome accession   NZ_CP117768
Coordinates   245396..247408 (+) Length   670 a.a.
NCBI ID   WP_273766374.1    Uniprot ID   -
Organism   Nostoc sp. UHCC 0926     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 240396..252408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQG02_RS01595 (PQG02_01635) - 240801..241061 (+) 261 WP_273766368.1 hypothetical protein -
  PQG02_RS01600 (PQG02_01640) - 241389..241556 (+) 168 WP_273766370.1 hypothetical protein -
  PQG02_RS01605 (PQG02_01645) dnaK 241627..243585 (-) 1959 WP_273766372.1 molecular chaperone DnaK -
  PQG02_RS01610 (PQG02_01655) grpE 243832..244581 (-) 750 WP_273766373.1 nucleotide exchange factor GrpE -
  PQG02_RS01615 (PQG02_01660) pilB/pilB1 245396..247408 (+) 2013 WP_273766374.1 type II/IV secretion system protein Machinery gene
  PQG02_RS01620 (PQG02_01665) pilT 247588..248712 (+) 1125 WP_273766376.1 type IV pilus twitching motility protein PilT Machinery gene
  PQG02_RS01625 (PQG02_01670) - 248788..250014 (+) 1227 WP_273766379.1 type II secretion system F family protein -
  PQG02_RS01630 (PQG02_01675) - 250157..251212 (-) 1056 Protein_215 IS630 family transposase -
  PQG02_RS01635 (PQG02_01680) - 251303..251863 (+) 561 WP_273766380.1 hypothetical protein -

Sequence

Protein


Download         Length: 670 a.a.        Molecular weight: 74760.87 Da        Isoelectric Point: 5.5439

>NTDB_id=787568 PQG02_RS01615 WP_273766374.1 245396..247408(+) (pilB/pilB1) [Nostoc sp. UHCC 0926]
MTYLSPQRRSTALTTRTEFSPFGNKLVQSGYANTEQMRQALIESRKSGRPLTEVLESITGQQLSPELLRQYKKQQLFELK
ILYGVEFLDPEVNQLGNTMIGNLIETLIPVDICRRHRLVPLSKHEDQTPPSVLVAMVAPDNLEASDDLNRILRPQGLALQ
RMVITQEDYQQLINQYLDEMAVRQKHLEQAKFTDINQDLENLGNLDIQDAPEEMEADLGAAMKGAEDAPVINLVNRILAK
ALHEKVSDIHIEPQEENLRIRFRKDGVLGEAFPPLPKKIIPALTARFKIISNLDIAERRIPQDGRIRRMFEGRKVDFRVS
TLPSRYGEKVVLRILDNSSTQLGLNKLITDPETLRIVQDMVSRPFGLILVTGPTGSGKTTSLYSALSEKNDPGINISTVE
DPIEYSLPGITQVQVIREKGLDFATALRAFLRQDPDVLLVGETRDKETAKTAIEAALTGHLVLTTLHTNDAPGAIARLGE
MGIEPFMVSSSLIGVLAQRLVRRVCSECRIPYTPTIKELARYGLSASSDVGVTFYKANSLTLEAIAEAKAKNQLCPACNG
VGYKGRCGVYEVMRVTENLQTLINEDAPTERIKEVAIEEGMKTLLAYSLDLVRQGATTLEEVERVTFTDTGLEAELKAKR
KTGLTCRTCDATLKPEWLDCPYCMTSRFQD

Nucleotide


Download         Length: 2013 bp        

>NTDB_id=787568 PQG02_RS01615 WP_273766374.1 245396..247408(+) (pilB/pilB1) [Nostoc sp. UHCC 0926]
ATGACTTACTTGTCACCACAACGGCGCAGTACCGCTCTAACTACCAGAACAGAGTTTTCGCCTTTCGGCAACAAGCTAGT
GCAATCTGGCTATGCCAATACCGAACAGATGAGGCAGGCACTAATTGAAAGCCGCAAATCTGGCAGACCCTTAACGGAAG
TACTAGAGTCAATCACTGGGCAACAACTATCGCCTGAGTTGCTCAGGCAATATAAAAAACAGCAGCTATTTGAACTTAAA
ATACTATATGGCGTTGAATTCCTCGATCCGGAAGTCAACCAGCTTGGCAACACGATGATCGGGAACCTAATTGAAACACT
CATTCCAGTAGATATCTGTCGTCGCCATCGTTTAGTACCACTGTCAAAACACGAAGACCAAACCCCGCCCTCAGTTTTAG
TGGCGATGGTCGCTCCAGATAATCTAGAGGCTTCCGATGACCTGAACCGCATCTTGCGTCCCCAAGGCTTGGCATTGCAG
CGGATGGTGATTACACAGGAAGACTACCAGCAGCTAATCAACCAATACCTGGATGAAATGGCTGTTCGGCAAAAGCACCT
GGAACAAGCAAAGTTTACAGATATTAATCAGGATTTAGAAAACCTCGGAAATCTCGATATTCAGGATGCTCCTGAAGAAA
TGGAGGCTGATCTAGGTGCGGCGATGAAGGGTGCAGAGGATGCCCCAGTCATCAACCTAGTCAACAGAATCCTGGCTAAA
GCTTTGCACGAGAAGGTTTCTGATATTCACATCGAACCGCAAGAAGAAAACTTACGCATTCGCTTTCGGAAAGATGGGGT
ACTGGGTGAAGCTTTCCCCCCCCTACCGAAAAAAATCATCCCGGCGCTGACAGCCCGATTTAAAATTATCTCCAATCTAG
ATATTGCTGAACGACGTATACCCCAAGACGGACGCATCCGGCGGATGTTTGAAGGACGTAAAGTAGACTTCCGCGTGAGC
ACCTTACCCAGTCGTTACGGGGAAAAGGTGGTGCTGCGGATTTTGGATAACTCCTCCACCCAACTAGGATTGAATAAGTT
AATTACTGATCCAGAGACTTTACGAATTGTCCAGGATATGGTCAGCCGTCCCTTTGGTCTGATTTTGGTGACTGGGCCAA
CTGGTTCTGGGAAAACAACCTCGCTCTATTCTGCACTCTCAGAAAAGAATGATCCCGGTATTAATATCAGTACAGTGGAA
GACCCAATTGAGTACAGCCTTCCAGGAATTACTCAAGTACAGGTGATTCGGGAAAAAGGGCTGGATTTTGCTACCGCATT
GCGGGCTTTCTTGCGGCAAGATCCAGATGTGCTACTGGTGGGTGAAACGCGGGATAAAGAAACGGCAAAAACAGCAATTG
AGGCTGCCTTGACGGGTCACTTAGTATTAACTACCTTACATACCAATGATGCCCCAGGAGCGATCGCTCGTTTGGGAGAA
ATGGGTATTGAGCCTTTCATGGTTTCTAGTTCGCTGATTGGCGTTTTAGCTCAACGTTTAGTGCGGCGTGTATGTTCTGA
ATGTCGCATTCCCTACACTCCTACGATCAAGGAACTGGCTCGCTATGGTCTATCAGCTTCCTCAGATGTCGGAGTCACCT
TCTACAAAGCTAACAGTTTGACATTAGAAGCGATCGCAGAAGCCAAAGCCAAAAATCAGCTTTGCCCGGCGTGTAATGGT
GTCGGCTACAAAGGGCGTTGTGGTGTTTATGAAGTCATGCGAGTTACCGAAAACCTGCAAACTCTCATCAACGAAGATGC
ACCCACAGAACGGATTAAGGAAGTGGCAATAGAAGAGGGCATGAAAACCTTGCTGGCTTACAGTTTGGACTTAGTGCGCC
AAGGTGCTACCACCCTAGAAGAAGTAGAACGAGTGACGTTTACTGATACTGGTTTGGAAGCCGAATTAAAAGCCAAACGC
AAGACTGGTCTTACTTGCCGGACTTGCGATGCCACATTGAAACCAGAATGGCTGGATTGTCCCTACTGTATGACATCTCG
TTTTCAAGACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(72-181)

Type II/IV secretion system protein (T2SSE)

(236-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

64.583

100

0.648