Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   PS055_RS10560 Genome accession   NZ_CP117650
Coordinates   2147044..2148024 (-) Length   326 a.a.
NCBI ID   WP_072243531.1    Uniprot ID   -
Organism   Escherichia albertii strain BIA_16-1     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2142044..2153024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PS055_RS10530 (PS055_10530) - 2142699..2143196 (+) 498 WP_002461299.1 SprT family zinc-dependent metalloprotease -
  PS055_RS10535 (PS055_10535) endA 2143291..2143998 (+) 708 WP_002461298.1 deoxyribonuclease I -
  PS055_RS10540 (PS055_10540) rsmE 2144078..2144809 (+) 732 WP_002461297.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  PS055_RS10545 (PS055_10545) gshB 2144822..2145772 (+) 951 WP_000593300.1 glutathione synthase -
  PS055_RS10550 (PS055_10550) - 2145881..2146444 (+) 564 WP_002461296.1 YqgE/AlgH family protein -
  PS055_RS10555 (PS055_10555) ruvX 2146444..2146878 (+) 435 WP_059220283.1 Holliday junction resolvase RuvX -
  PS055_RS10560 (PS055_10560) pilT 2147044..2148024 (-) 981 WP_072243531.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  PS055_RS10565 (PS055_10565) yggS 2148042..2148746 (+) 705 WP_059220282.1 pyridoxal phosphate homeostasis protein -
  PS055_RS10570 (PS055_10570) yggT 2148764..2149330 (+) 567 WP_001094839.1 osmotic shock tolerance protein YggT -
  PS055_RS10575 (PS055_10575) yggU 2149327..2149617 (+) 291 WP_059220281.1 DUF167 family protein YggU -
  PS055_RS10580 (PS055_10580) - 2149625..2150218 (+) 594 WP_001174776.1 XTP/dITP diphosphatase -
  PS055_RS10585 (PS055_10585) hemW 2150211..2151347 (+) 1137 WP_059220280.1 radical SAM family heme chaperone HemW -
  PS055_RS10590 (PS055_10590) - 2151412..2152419 (-) 1008 WP_059220279.1 DUF1202 family protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36066.22 Da        Isoelectric Point: 5.6102

>NTDB_id=786792 PS055_RS10560 WP_072243531.1 2147044..2148024(-) (pilT) [Escherichia albertii strain BIA_16-1]
MNMEEIVALSVKHNVSDLHLCSVWPARWRIRGRMEAAPFDTPDVEELLREWLDDDQRALLLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSHCPQLEQLGAPTVLPELLNNENGLILVTGATGSGKSTTLAAMVGYLNQRTDAHILTLEDPVE
YLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMLTFQQSYQQR
VGEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=786792 PS055_RS10560 WP_072243531.1 2147044..2148024(-) (pilT) [Escherichia albertii strain BIA_16-1]
ATGAATATGGAAGAAATTGTGGCTCTTAGTGTAAAGCATAATGTCTCGGATCTACACCTGTGTAGCGTCTGGCCTGCACG
CTGGCGTATTCGCGGGAGGATGGAAGCTGCGCCGTTTGATACGCCGGACGTTGAAGAGCTGCTAAGGGAATGGCTGGATG
ACGATCAGCGAGCGTTATTGCTGGAGAATGGGCAGTTGGATTTTGCCGTGTCGTTGGCGGAAAACCAGCGATTGCGCGGC
AGTGCGTTCGCGCAACGGCAAGGCATTTCGCTGGCGTTACGGTTGTTGCCTTCGCATTGCCCGCAACTCGAACAGCTTGG
TGCGCCGACGGTATTACCGGAACTACTCAATAACGAGAATGGACTGATTCTGGTGACGGGGGCGACGGGGAGCGGCAAAT
CCACCACACTGGCGGCGATGGTTGGTTATCTCAATCAGCGTACCGATGCGCATATTCTTACGCTGGAAGATCCTGTGGAA
TATCTTTATGCCAGCCAGCGATGTTTGATCCAGCAGCGGGAGATTGGTTTGCACTGTATGACGTTTGCATCGGGATTACG
TGCGGCATTGCGGGAAGATCCCGATGTAATTTTGCTTGGCGAGCTGCGTGACAGCGAGACCATTCGCCTGGCGTTGACGG
CGGCAGAAACAGGTCATCTGGTGCTGGCAACCTTGCATACGCGCGGAGCGGCTCAGGCGGTCGAGCGGCTGGTGGATTCG
TTTCCGGCGCAGGAAAAAGATCCCGTGCGTAATCAACTGGCAGGTAGTTTACGGGCCGTGTTGTCACAAAAGCTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTGTTTGAATTGCTGATTAACACACCTGCGGTGGGGAATTTGATTCGCGAAGGGA
AAACCCACCAGTTGCCGCATGTTATTCAAACCGGGCAGCAGGTGGGGATGTTAACTTTTCAGCAGAGTTATCAGCAGCGG
GTGGGGGAAGGGCGTTTGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(62-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.541

100

0.497
  pilT Vibrio cholerae strain A1552

49.541

100

0.497
  pilT Neisseria meningitidis 8013

47.866

100

0.482
  pilT Neisseria gonorrhoeae MS11

47.561

100

0.479
  pilT Acinetobacter baumannii D1279779

46.483

100

0.466
  pilT Acinetobacter baylyi ADP1

46.483

100

0.466
  pilT Acinetobacter baumannii strain A118

46.483

100

0.466
  pilT Acinetobacter nosocomialis M2

46.483

100

0.466
  pilT Pseudomonas stutzeri DSM 10701

46.483

100

0.466
  pilT Pseudomonas aeruginosa PAK

46.177

100

0.463
  pilT Legionella pneumophila strain ERS1305867

44.954

100

0.451
  pilT Legionella pneumophila strain Lp02

44.954

100

0.451
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.824

97.546

0.408
  pilU Vibrio cholerae strain A1552

40.379

97.239

0.393
  pilU Pseudomonas stutzeri DSM 10701

38.554

100

0.393