Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   PS031_RS13895 Genome accession   NZ_CP117606
Coordinates   2841306..2842286 (-) Length   326 a.a.
NCBI ID   WP_010336949.1    Uniprot ID   -
Organism   Escherichia albertii strain BIA_29     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2836306..2847286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PS031_RS13865 (PS031_13865) - 2836961..2837458 (+) 498 WP_204629118.1 SprT family zinc-dependent metalloprotease -
  PS031_RS13870 (PS031_13870) endA 2837553..2838260 (+) 708 WP_002461298.1 deoxyribonuclease I -
  PS031_RS13875 (PS031_13875) rsmE 2838340..2839071 (+) 732 WP_002461297.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  PS031_RS13880 (PS031_13880) gshB 2839084..2840034 (+) 951 WP_137651354.1 glutathione synthase -
  PS031_RS13885 (PS031_13885) - 2840143..2840706 (+) 564 WP_137650140.1 YqgE/AlgH family protein -
  PS031_RS13890 (PS031_13890) ruvX 2840706..2841122 (+) 417 WP_000017099.1 Holliday junction resolvase RuvX -
  PS031_RS13895 (PS031_13895) pilT 2841306..2842286 (-) 981 WP_010336949.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  PS031_RS13900 (PS031_13900) yggS 2842304..2843008 (+) 705 WP_204629116.1 YggS family pyridoxal phosphate-dependent enzyme -
  PS031_RS13905 (PS031_13905) yggT 2843026..2843592 (+) 567 WP_001094839.1 osmotic shock tolerance protein YggT -
  PS031_RS13910 (PS031_13910) yggU 2843589..2843879 (+) 291 WP_001277225.1 DUF167 family protein YggU -
  PS031_RS13915 (PS031_13915) - 2843887..2844480 (+) 594 WP_001174776.1 XTP/dITP diphosphatase -
  PS031_RS13920 (PS031_13920) hemW 2844473..2845609 (+) 1137 WP_059218090.1 radical SAM family heme chaperone HemW -
  PS031_RS13925 (PS031_13925) - 2845674..2846681 (-) 1008 WP_204629115.1 DUF1202 family protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36019.12 Da        Isoelectric Point: 5.5860

>NTDB_id=786615 PS031_RS13895 WP_010336949.1 2841306..2842286(-) (pilT) [Escherichia albertii strain BIA_29]
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDTPDVEELLREWLDDDQRALLLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSHCPQLEQLGAPTVLPELLNNENGLILVTGATGSGKSTTLAAMVGYLNQHTDAHILTLEDPVE
YLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMLTFQQSYQQR
VGEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=786615 PS031_RS13895 WP_010336949.1 2841306..2842286(-) (pilT) [Escherichia albertii strain BIA_29]
ATGAATATGGAAGAAATTGTGGCTCTTAGTGTAAAGCATAATGTCTCGGATCTACACCTGTGTAGCGCCTGGCCTGCACG
CTGGCGTATTCGCGGGAGGATGGAAGCTGCGCCGTTTGATACGCCGGACGTTGAAGAGCTGCTAAGGGAATGGCTGGATG
ACGATCAGCGAGCGTTATTGCTGGAGAATGGGCAGTTGGATTTTGCCGTGTCGTTGGCGGAAAACCAGCGATTGCGCGGC
AGTGCGTTCGCGCAACGGCAAGGCATTTCGCTGGCGTTACGGTTGTTGCCTTCGCATTGCCCGCAACTCGAACAGCTTGG
TGCGCCGACGGTATTACCGGAACTACTCAATAACGAGAATGGACTGATTCTGGTGACGGGGGCGACGGGGAGCGGCAAAT
CCACCACACTGGCGGCGATGGTTGGTTATCTCAATCAGCATACCGATGCGCATATTCTTACGCTGGAAGATCCTGTGGAA
TATCTTTATGCCAGCCAGCGATGTTTGATCCAGCAGCGGGAGATTGGTTTGCACTGTATGACGTTTGCATCGGGATTACG
TGCGGCATTGCGGGAAGATCCCGATGTAATTTTGCTTGGCGAGCTGCGTGACAGCGAGACCATTCGTCTGGCGTTGACGG
CGGCAGAAACAGGTCATCTGGTGCTGGCAACCTTGCATACGCGCGGAGCGGCTCAGGCGGTCGAGCGGCTGGTGGATTCG
TTTCCGGCGCAGGAAAAAGATCCCGTGCGTAATCAACTGGCGGGTAGTTTACGGGCCGTGTTGTCACAAAAGCTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTGTTTGAATTGCTGATTAACACACCTGCGGTGGGGAATTTGATTCGCGAAGGGA
AAACCCACCAGTTGCCGCATGTTATTCAAACCGGGCAGCAGGTGGGGATGTTAACTTTTCAGCAGAGTTATCAGCAGCGG
GTGGGGGAAGGGCGTTTGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(62-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.847

100

0.5
  pilT Vibrio cholerae strain A1552

49.847

100

0.5
  pilT Neisseria meningitidis 8013

47.866

100

0.482
  pilT Neisseria gonorrhoeae MS11

47.561

100

0.479
  pilT Acinetobacter baylyi ADP1

46.789

100

0.469
  pilT Acinetobacter baumannii D1279779

46.483

100

0.466
  pilT Acinetobacter baumannii strain A118

46.483

100

0.466
  pilT Acinetobacter nosocomialis M2

46.483

100

0.466
  pilT Pseudomonas stutzeri DSM 10701

46.483

100

0.466
  pilT Pseudomonas aeruginosa PAK

46.177

100

0.463
  pilT Legionella pneumophila strain ERS1305867

44.954

100

0.451
  pilT Legionella pneumophila strain Lp02

44.954

100

0.451
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.824

97.546

0.408
  pilU Vibrio cholerae strain A1552

40.694

97.239

0.396
  pilU Pseudomonas stutzeri DSM 10701

38.554

100

0.393