Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   PQQ01_RS03640 Genome accession   NZ_CP117307
Coordinates   760940..761920 (+) Length   326 a.a.
NCBI ID   WP_274890883.1    Uniprot ID   -
Organism   Salmonella enterica subsp. enterica serovar Derby strain RM004     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 755940..766920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQQ01_RS03610 (PQQ01_03610) - 756517..757524 (+) 1008 WP_000252197.1 DUF1202 domain-containing protein -
  PQQ01_RS03615 (PQQ01_03615) hemW 757616..758752 (-) 1137 WP_023138753.1 radical SAM family heme chaperone HemW -
  PQQ01_RS03620 (PQQ01_03620) - 758745..759338 (-) 594 WP_001174769.1 XTP/dITP diphosphatase -
  PQQ01_RS03625 (PQQ01_03625) yggU 759346..759636 (-) 291 WP_001277203.1 DUF167 family protein YggU -
  PQQ01_RS03630 (PQQ01_03630) - 759633..760199 (-) 567 WP_001094848.1 YggT family protein -
  PQQ01_RS03635 (PQQ01_03635) - 760218..760922 (-) 705 WP_000997812.1 YggS family pyridoxal phosphate-dependent enzyme -
  PQQ01_RS03640 (PQQ01_03640) pilT 760940..761920 (+) 981 WP_274890883.1 type IV pilus twitching motility protein PilT Machinery gene
  PQQ01_RS03645 (PQQ01_03645) - 762050..762736 (+) 687 WP_023202165.1 IclR family transcriptional regulator -
  PQQ01_RS03650 (PQQ01_03650) ruvX 762783..763199 (-) 417 WP_001285491.1 Holliday junction resolvase RuvX -
  PQQ01_RS03655 (PQQ01_03655) - 763199..763762 (-) 564 WP_001053167.1 YqgE/AlgH family protein -
  PQQ01_RS03660 (PQQ01_03660) gshB 763978..764925 (-) 948 WP_023232636.1 glutathione synthase -
  PQQ01_RS03665 (PQQ01_03665) rsmE 764945..765676 (-) 732 WP_001675718.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  PQQ01_RS03670 (PQQ01_03670) endA 765753..766460 (-) 708 WP_023232637.1 deoxyribonuclease I -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36081.27 Da        Isoelectric Point: 7.8166

>NTDB_id=783731 PQQ01_RS03640 WP_274890883.1 760940..761920(+) (pilT) [Salmonella enterica subsp. enterica serovar Derby strain RM004]
MNMEEIVTLSVKHNVSDLHLCNAWPARWRKQGRMENAPFTAPAVDRLLLDWLNDAQQYQWRTHGQLDFAVSLSGTRRLRA
SAFTHQQGTSLALRLLPERCPDLAEIQTPPIVPALLASENGLILVTGATGCGKSTTLAAMVGHLNQHADKHILTLEDPIE
YRYTSKRCLIQQREIGQHCATFAAGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKEPVRSQLAGSLRAVLSQKLEVDRQDGRVALFELLINTPATGNLIREGKLHQLAHVIQTGQQQGMMTFAQSAQWR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=783731 PQQ01_RS03640 WP_274890883.1 760940..761920(+) (pilT) [Salmonella enterica subsp. enterica serovar Derby strain RM004]
ATGAATATGGAAGAAATTGTGACGCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGTAACGCCTGGCCTGCGCG
ATGGCGCAAACAAGGACGCATGGAGAACGCGCCTTTTACCGCACCTGCTGTCGACAGGCTTCTGCTCGATTGGCTTAATG
ATGCGCAACAATATCAGTGGCGAACGCACGGCCAGCTTGATTTCGCCGTCTCGCTGTCTGGCACGCGGCGCCTGCGCGCC
AGTGCGTTCACACATCAACAGGGAACGTCGCTGGCGCTACGGCTATTGCCCGAGCGTTGTCCTGATCTGGCGGAAATCCA
GACGCCGCCGATAGTACCCGCACTGCTTGCCAGCGAGAACGGACTGATTCTGGTCACTGGCGCTACTGGCTGCGGGAAAT
CCACTACGCTGGCGGCGATGGTGGGACATCTTAATCAACATGCCGATAAACACATCCTGACGCTGGAAGATCCTATTGAG
TACCGTTACACCAGCAAGCGTTGCCTGATACAGCAGCGGGAAATCGGCCAGCATTGCGCCACTTTTGCCGCCGGGCTGCG
CGCGGCGTTACGTGAAGATCCCGATGTCATTTTACTGGGAGAGCTGCGTGACAGCGAGACCATTCGCCTGGCGCTGACGG
CGGCGGAAACGGGGCATCTGGTACTGGCAACCCTGCATACTCGCGGTGCGGCGCAGGCGGTGGAAAGATTAGTGGATAGT
TTTCCGGCGCAGGAAAAAGAACCGGTACGCAGCCAACTGGCGGGTAGTCTGCGCGCCGTACTATCACAAAAACTGGAGGT
CGACAGACAGGATGGGCGCGTGGCGTTGTTTGAATTACTGATTAATACGCCAGCCACAGGGAATTTGATCCGTGAAGGCA
AACTCCATCAGTTGGCCCACGTGATACAAACCGGGCAGCAGCAGGGGATGATGACATTCGCCCAGAGCGCGCAATGGCGT
CAGGCGCAGGGACGGCTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(76-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.318

100

0.485
  pilT Vibrio cholerae strain A1552

48.318

100

0.485
  pilT Neisseria meningitidis 8013

47.866

100

0.482
  pilT Neisseria gonorrhoeae MS11

47.561

100

0.479
  pilT Acinetobacter baylyi ADP1

44.985

100

0.454
  pilT Acinetobacter baumannii strain A118

45.26

100

0.454
  pilT Acinetobacter baumannii D1279779

45.26

100

0.454
  pilT Pseudomonas stutzeri DSM 10701

44.681

100

0.451
  pilT Pseudomonas aeruginosa PAK

44.954

100

0.451
  pilT Acinetobacter nosocomialis M2

44.954

100

0.451
  pilT Legionella pneumophila strain ERS1305867

44.34

97.546

0.433
  pilT Legionella pneumophila strain Lp02

44.34

97.546

0.433
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.824

97.546

0.408
  pilU Vibrio cholerae strain A1552

38.245

97.853

0.374
  pilU Pseudomonas stutzeri DSM 10701

35.65

100

0.362