Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   IB212_RS19095 Genome accession   NZ_CP115601
Coordinates   4003319..4004299 (-) Length   326 a.a.
NCBI ID   WP_041908325.1    Uniprot ID   A0AAU7N8L0
Organism   Enterobacter sp. E12     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3998319..4009299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IB212_RS19065 (IB212_19020) - 3999201..3999698 (+) 498 WP_136485047.1 SprT family zinc-dependent metalloprotease -
  IB212_RS19070 (IB212_19025) endA 3999793..4000500 (+) 708 WP_028014365.1 deoxyribonuclease I -
  IB212_RS19075 (IB212_19030) rsmE 4000552..4001283 (+) 732 WP_041908327.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  IB212_RS19080 (IB212_19035) gshB 4001303..4002250 (+) 948 WP_033146605.1 glutathione synthase -
  IB212_RS19085 (IB212_19040) - 4002333..4002893 (+) 561 WP_028014368.1 YqgE/AlgH family protein -
  IB212_RS19090 (IB212_19045) ruvX 4002893..4003309 (+) 417 WP_188245984.1 Holliday junction resolvase RuvX -
  IB212_RS19095 (IB212_19050) pilT 4003319..4004299 (-) 981 WP_041908325.1 type IV pilus twitching motility protein PilT Machinery gene
  IB212_RS19100 (IB212_19055) - 4004317..4005018 (+) 702 WP_188245985.1 YggS family pyridoxal phosphate-dependent enzyme -
  IB212_RS19105 (IB212_19060) - 4005040..4005606 (+) 567 WP_045260768.1 YggT family protein -
  IB212_RS19110 (IB212_19065) yggU 4005603..4005899 (+) 297 WP_047364545.1 DUF167 family protein YggU -
  IB212_RS19115 (IB212_19070) - 4005903..4006496 (+) 594 WP_010435473.1 XTP/dITP diphosphatase -
  IB212_RS19120 (IB212_19075) hemW 4006489..4007631 (+) 1143 WP_188245986.1 radical SAM family heme chaperone HemW -
  IB212_RS19125 (IB212_19080) - 4007695..4008033 (+) 339 WP_028014373.1 endonuclease domain-containing protein -
  IB212_RS19130 (IB212_19085) - 4008104..4008823 (-) 720 WP_188245987.1 DUF2884 domain-containing protein -
  IB212_RS19135 (IB212_19090) - 4008878..4009204 (-) 327 WP_028014375.1 YggL family protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35583.65 Da        Isoelectric Point: 6.3904

>NTDB_id=772679 IB212_RS19095 WP_041908325.1 4003319..4004299(-) (pilT) [Enterobacter sp. E12]
MDVEEIVALSVKHNVSDLHLCSDSPPRWRRLGRLEPAPFPPPDVGALLKAWLNDEQQGAWWANGQVDFAVTVAGDQRLRG
SAFKQMKGISVTLRLLPRSCPQLPSLGVPRAIPELLSSDNGLILVTGATGSGKSTTLAAMVDFLNRHTDGHILTLEDPVE
FMYQSERCLIQQREIGQHSPSFAEALRSALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAIERLVDT
FPAQEKDPVRNQLAGSLRAVLAQKLLPDLQGGRVALYELLVNTAAAANLIREGKTWQLPGIIQTGQQAGMQNFDQSLAER
RAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=772679 IB212_RS19095 WP_041908325.1 4003319..4004299(-) (pilT) [Enterobacter sp. E12]
ATGGATGTGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCCGATCTACACCTGTGCAGTGATTCACCACCGCG
CTGGCGCAGATTGGGCCGCCTTGAGCCGGCCCCGTTTCCGCCGCCGGACGTCGGGGCGTTGCTAAAGGCGTGGCTCAACG
ACGAACAGCAGGGCGCATGGTGGGCAAACGGGCAGGTCGATTTTGCCGTGACGGTCGCAGGAGACCAGCGTCTGCGCGGC
AGTGCGTTTAAGCAGATGAAGGGCATCTCCGTTACCCTGCGGCTGTTGCCGCGTTCCTGTCCGCAGCTCCCTTCGCTTGG
GGTGCCGCGCGCTATTCCCGAACTGTTGTCCAGCGACAACGGGTTGATTCTGGTAACGGGAGCGACCGGCAGCGGTAAAT
CCACCACGCTGGCCGCAATGGTCGACTTCCTCAACCGCCATACTGACGGCCATATCCTCACGCTTGAAGATCCGGTGGAG
TTTATGTACCAGAGTGAACGTTGCCTGATTCAGCAGCGGGAGATAGGCCAGCACAGCCCGTCATTTGCAGAGGCGCTGCG
CAGTGCGTTACGCGAGGACCCGGACGTTATTTTGCTGGGGGAGCTGCGCGACAGCGAAACGATCCGCCTGGCGCTGACGG
CGGCGGAGACCGGGCATCTGGTGCTGGCGACGCTGCATACGCGCGGGGCAGCACAGGCGATTGAACGGCTGGTCGATACG
TTCCCGGCGCAGGAGAAAGATCCGGTGCGTAACCAGCTGGCTGGCAGCCTGCGGGCAGTGCTGGCGCAAAAGCTGCTTCC
CGATCTTCAGGGTGGGCGCGTCGCGCTGTACGAGCTGCTGGTAAACACCGCGGCGGCGGCGAATCTGATTCGTGAGGGGA
AGACGTGGCAGCTGCCCGGCATCATTCAAACCGGCCAGCAGGCGGGAATGCAGAACTTTGACCAGAGCCTGGCGGAGAGA
CGGGCACAGGGGCGGCTTTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(90-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.459

100

0.506
  pilT Vibrio cholerae strain A1552

50.459

100

0.506
  pilT Pseudomonas stutzeri DSM 10701

48.93

100

0.491
  pilT Legionella pneumophila strain Lp02

49.689

98.773

0.491
  pilT Legionella pneumophila strain ERS1305867

49.689

98.773

0.491
  pilT Neisseria meningitidis 8013

48.171

100

0.485
  pilT Acinetobacter baumannii strain A118

48.318

100

0.485
  pilT Acinetobacter baylyi ADP1

48.318

100

0.485
  pilT Acinetobacter baumannii D1279779

48.318

100

0.485
  pilT Neisseria gonorrhoeae MS11

47.866

100

0.482
  pilT Pseudomonas aeruginosa PAK

48.012

100

0.482
  pilT Acinetobacter nosocomialis M2

48.75

98.16

0.479
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.857

98.773

0.423
  pilU Pseudomonas stutzeri DSM 10701

39.091

100

0.396
  pilU Vibrio cholerae strain A1552

39.441

98.773

0.39