Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   O6P33_RS10185 Genome accession   NZ_CP114976
Coordinates   2173497..2173904 (+) Length   135 a.a.
NCBI ID   WP_269819514.1    Uniprot ID   A0AAE9VV70
Organism   Denitrificimonas caeni strain CE14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2168497..2178904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6P33_RS10165 (O6P33_10165) - 2168566..2168754 (+) 189 WP_420094994.1 PA3496 family putative envelope integrity protein -
  O6P33_RS10170 (O6P33_10170) pilD 2168999..2169868 (-) 870 WP_269817671.1 prepilin peptidase Machinery gene
  O6P33_RS10175 (O6P33_10175) pilC 2170097..2171314 (-) 1218 WP_269817672.1 type II secretion system F family protein Machinery gene
  O6P33_RS10180 (O6P33_10180) pilB 2171318..2173012 (-) 1695 WP_269817673.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O6P33_RS10185 (O6P33_10185) comP 2173497..2173904 (+) 408 WP_269819514.1 pilin Machinery gene
  O6P33_RS10190 (O6P33_10190) - 2174104..2174424 (+) 321 WP_269817674.1 excalibur calcium-binding domain-containing protein -
  O6P33_RS10195 (O6P33_10195) - 2174894..2175895 (+) 1002 WP_269817675.1 hypothetical protein -
  O6P33_RS10200 (O6P33_10200) - 2176101..2176469 (-) 369 WP_269817676.1 translation initiation factor Sui1 -
  O6P33_RS10205 (O6P33_10205) - 2176549..2177004 (-) 456 WP_269817677.1 methyltransferase family protein -
  O6P33_RS10210 (O6P33_10210) - 2177301..2178773 (+) 1473 WP_269817678.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 13755.62 Da        Isoelectric Point: 4.1476

>NTDB_id=767655 O6P33_RS10185 WP_269819514.1 2173497..2173904(+) (comP) [Denitrificimonas caeni strain CE14]
MKAQMQKGFTLIELMIVVAIIGILAAIALPAYQDYTVRAKVSEGLVQAAGAKATVSENISASAADNCSGVNTGTIGMTTI
GCTSSTGTATIDVSVDAGSATVTFDLVGTLDNTTGGVEWVCNNASDDKYVPVQCR

Nucleotide


Download         Length: 408 bp        

>NTDB_id=767655 O6P33_RS10185 WP_269819514.1 2173497..2173904(+) (comP) [Denitrificimonas caeni strain CE14]
ATGAAAGCACAAATGCAAAAGGGTTTTACTCTTATTGAATTAATGATCGTAGTTGCGATCATCGGTATTTTGGCGGCGAT
TGCATTACCGGCGTATCAGGACTACACAGTTCGAGCTAAAGTTTCGGAAGGATTAGTACAAGCCGCTGGAGCCAAAGCAA
CTGTATCTGAAAACATTTCAGCATCAGCAGCAGATAACTGCTCTGGTGTAAATACGGGTACAATTGGCATGACTACAATT
GGCTGTACAAGCTCAACAGGAACTGCAACTATTGATGTGTCTGTTGATGCTGGTTCAGCAACTGTTACTTTTGACTTGGT
TGGTACTTTAGACAACACAACTGGTGGTGTTGAGTGGGTGTGTAATAACGCTTCTGATGATAAATATGTACCTGTTCAAT
GCCGTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(37-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(6-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

49.324

100

0.541
  pilA Ralstonia pseudosolanacearum GMI1000

42.073

100

0.511
  pilA/pilAI Pseudomonas stutzeri DSM 10701

46.043

100

0.474
  pilE Neisseria gonorrhoeae MS11

38.554

100

0.474
  pilA2 Legionella pneumophila str. Paris

43.537

100

0.474
  pilA2 Legionella pneumophila strain ERS1305867

43.537

100

0.474
  pilE Neisseria gonorrhoeae strain FA1090

38.65

100

0.467
  pilA/pilA1 Eikenella corrodens VA1

36.943

100

0.43
  pilA Pseudomonas aeruginosa PAK

37.333

100

0.415
  pilA/pilAII Pseudomonas stutzeri DSM 10701

41.353

98.519

0.407
  pilA Acinetobacter baumannii strain A118

36.806

100

0.393
  pilA Vibrio parahaemolyticus RIMD 2210633

42.4

92.593

0.393