Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   O6P33_RS10175 Genome accession   NZ_CP114976
Coordinates   2170097..2171314 (-) Length   405 a.a.
NCBI ID   WP_269817672.1    Uniprot ID   A0AAE9VM63
Organism   Denitrificimonas caeni strain CE14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2165097..2176314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6P33_RS10145 (O6P33_10145) - 2165275..2165904 (-) 630 WP_269817665.1 alpha/beta hydrolase -
  O6P33_RS10150 (O6P33_10150) - 2166057..2166503 (+) 447 WP_269817667.1 YhcB family protein -
  O6P33_RS10155 (O6P33_10155) rluC 2166644..2167612 (-) 969 WP_269817668.1 23S rRNA pseudouridine(955/2504/2580) synthase RluC -
  O6P33_RS10160 (O6P33_10160) nth 2167822..2168460 (+) 639 WP_269817669.1 endonuclease III -
  O6P33_RS10165 (O6P33_10165) - 2168566..2168754 (+) 189 WP_420094994.1 PA3496 family putative envelope integrity protein -
  O6P33_RS10170 (O6P33_10170) pilD 2168999..2169868 (-) 870 WP_269817671.1 prepilin peptidase Machinery gene
  O6P33_RS10175 (O6P33_10175) pilC 2170097..2171314 (-) 1218 WP_269817672.1 type II secretion system F family protein Machinery gene
  O6P33_RS10180 (O6P33_10180) pilB 2171318..2173012 (-) 1695 WP_269817673.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O6P33_RS10185 (O6P33_10185) comP 2173497..2173904 (+) 408 WP_269819514.1 pilin Machinery gene
  O6P33_RS10190 (O6P33_10190) - 2174104..2174424 (+) 321 WP_269817674.1 excalibur calcium-binding domain-containing protein -
  O6P33_RS10195 (O6P33_10195) - 2174894..2175895 (+) 1002 WP_269817675.1 hypothetical protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43909.64 Da        Isoelectric Point: 9.9280

>NTDB_id=767653 O6P33_RS10175 WP_269817672.1 2170097..2171314(-) (pilC) [Denitrificimonas caeni strain CE14]
MAAKTPKTSMYKWEGKNRQGAPMSGQMAGQNVALVKAQLRKQGVNPTKVRKKGIELFSAGKKIKPMDIAIFTRQMSTMMK
AGVPLLQSFDIIAEGLDNPNMRKLVENIKQDVAGGNSFAVSLRKHPQYFDDLYCNLVESGEQAGALETLLDRVATYKEKT
EALKAKIKKAMNYPIAVVAVAVIVTAILLIKVVPQFQDVFSSFGAELPAFTLFVIGISEFIQSKGWVIVVAFVAFVFVFR
HLHKSSEKFRDTMDRALLKAPVIGDIIYKSSVARFGRTLATTFSAGVPLVEALDSVAGATGNVVFKNAVNKIKADVSSGM
QLNFSMRSTGVFPSMALQMTAIGEESGALDEMLDKVALHYEAEVDNAVDGLTALMEPIIMSVLGVLVGGLIIAMYLPIFQ
LGAVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=767653 O6P33_RS10175 WP_269817672.1 2170097..2171314(-) (pilC) [Denitrificimonas caeni strain CE14]
ATGGCGGCAAAAACACCAAAAACAAGTATGTACAAGTGGGAAGGCAAGAACCGCCAAGGCGCGCCCATGTCCGGGCAAAT
GGCAGGGCAGAATGTCGCTTTAGTGAAAGCGCAGCTGCGTAAACAGGGCGTGAACCCAACGAAAGTACGCAAAAAAGGCA
TTGAGCTGTTCAGTGCTGGCAAAAAAATCAAGCCAATGGATATCGCCATTTTTACTCGGCAAATGTCAACGATGATGAAA
GCCGGTGTGCCCTTGTTGCAATCCTTCGACATTATTGCTGAAGGGTTGGATAACCCTAATATGCGCAAGCTGGTGGAAAA
TATAAAACAGGATGTAGCTGGCGGTAATAGTTTTGCGGTGTCTTTACGGAAGCACCCGCAGTATTTTGATGATCTGTACT
GCAACTTGGTTGAATCTGGTGAGCAGGCGGGTGCGCTAGAGACTTTGCTGGATCGTGTGGCCACCTATAAAGAAAAGACC
GAAGCGCTGAAAGCTAAAATCAAAAAGGCCATGAACTACCCCATTGCTGTTGTGGCAGTGGCGGTGATTGTGACAGCTAT
CTTGCTGATTAAAGTGGTACCGCAGTTCCAAGATGTGTTCTCTAGCTTTGGTGCCGAGTTGCCTGCCTTTACGTTATTTG
TAATTGGTATTTCTGAGTTTATTCAGAGTAAGGGCTGGGTGATTGTGGTGGCCTTTGTTGCTTTTGTGTTCGTATTTAGG
CATTTGCATAAGTCTTCAGAGAAATTTCGCGACACTATGGATCGGGCCTTATTAAAGGCGCCGGTGATTGGCGATATTAT
TTATAAATCTTCTGTGGCGCGTTTCGGCCGTACTTTGGCGACAACCTTTTCCGCTGGTGTACCTTTAGTGGAAGCACTGG
ACTCGGTAGCTGGAGCGACGGGCAACGTGGTGTTTAAAAATGCGGTGAATAAGATCAAAGCTGATGTATCTAGTGGTATG
CAGTTGAACTTCTCGATGCGCAGTACTGGGGTGTTTCCATCCATGGCGTTGCAGATGACGGCTATTGGTGAGGAGTCCGG
TGCGCTGGATGAGATGTTGGATAAAGTTGCGCTGCACTATGAGGCTGAAGTGGATAACGCGGTGGATGGTTTAACTGCGT
TGATGGAGCCGATTATTATGTCTGTGCTGGGTGTGTTGGTGGGTGGCTTGATTATTGCCATGTACTTGCCAATCTTCCAG
TTGGGTGCGGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(277-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

78.025

100

0.78
  pilC Acinetobacter baylyi ADP1

57.882

100

0.58
  pilC Acinetobacter baumannii D1279779

58.942

98.025

0.578
  pilC Legionella pneumophila strain ERS1305867

52.463

100

0.526
  pilG Neisseria meningitidis 44/76-A

44.5

98.765

0.44
  pilG Neisseria gonorrhoeae MS11

44.5

98.765

0.44
  pilC Vibrio cholerae strain A1552

41.235

100

0.412
  pilC Vibrio campbellii strain DS40M4

39.163

100

0.393
  pilC Thermus thermophilus HB27

38.155

99.012

0.378