Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   O4D10_RS05710 Genome accession   NZ_CP114795
Coordinates   1342582..1343010 (+) Length   142 a.a.
NCBI ID   WP_005921364.1    Uniprot ID   -
Organism   Xanthomonas citri pv. citri strain CM-BD-sm     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1337582..1348010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4D10_RS05695 (O4D10_05685) coaE 1339483..1340094 (-) 612 WP_386341197.1 dephospho-CoA kinase -
  O4D10_RS05700 (O4D10_05690) - 1340108..1340971 (-) 864 WP_003491180.1 A24 family peptidase -
  O4D10_RS05705 (O4D10_05695) pilC 1340978..1342237 (-) 1260 WP_033836749.1 type II secretion system F family protein Machinery gene
  O4D10_RS05710 (O4D10_05700) comP 1342582..1343010 (+) 429 WP_005921364.1 pilin Machinery gene
  O4D10_RS05715 (O4D10_05705) pilA2 1343107..1343520 (+) 414 WP_005921365.1 pilin Machinery gene
  O4D10_RS05720 (O4D10_05710) pilB 1343562..1345298 (+) 1737 WP_386341199.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O4D10_RS05725 (O4D10_05715) pilB 1345395..1345514 (+) 120 WP_005915819.1 hypothetical protein Machinery gene
  O4D10_RS05730 - 1345596..1345778 (+) 183 Protein_1131 hypothetical protein -
  O4D10_RS05735 (O4D10_05720) pilR 1345964..1347418 (-) 1455 WP_033484414.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 14513.65 Da        Isoelectric Point: 8.4798

>NTDB_id=767149 O4D10_RS05710 WP_005921364.1 1342582..1343010(+) (comP) [Xanthomonas citri pv. citri strain CM-BD-sm]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSELAVMASSFKTTVAENIANNGGTLPADACVGVGATAATTN
MASIACTPATGNIVVTGDATRTKGTVLTYAPTVGGANSAVGTTWTCTGSGSQSKYYPAECRR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=767149 O4D10_RS05710 WP_005921364.1 1342582..1343010(+) (comP) [Xanthomonas citri pv. citri strain CM-BD-sm]
ATGAAGAAGCAACAAGGCTTTACCCTGATCGAATTGATGATCGTTGTTGCGATCATCGCAATCCTGGCCGCCATTGCTCT
TCCGGCTTATCAGGACTACACCATTCGCTCGCGTGTTTCGGAACTGGCCGTGATGGCTAGCTCCTTTAAGACGACCGTTG
CGGAAAACATCGCCAACAACGGCGGCACCCTGCCAGCTGACGCTTGCGTCGGCGTTGGTGCTACCGCTGCGACCACTAAT
ATGGCTTCCATCGCTTGCACTCCCGCGACTGGCAACATCGTCGTAACCGGCGATGCAACTCGGACCAAGGGCACCGTTTT
GACCTATGCTCCGACAGTGGGCGGTGCTAACTCGGCGGTTGGTACCACTTGGACCTGCACCGGCAGTGGTAGCCAGTCCA
AGTACTATCCGGCCGAGTGCCGCCGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-141)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

54.305

100

0.577
  pilA2 Legionella pneumophila str. Paris

55.319

99.296

0.549
  pilA2 Legionella pneumophila strain ERS1305867

54.61

99.296

0.542
  pilA Ralstonia pseudosolanacearum GMI1000

41.463

100

0.479
  pilA Pseudomonas aeruginosa PAK

37.58

100

0.415
  pilA/pilA1 Eikenella corrodens VA1

38.411

100

0.408
  pilE Neisseria gonorrhoeae strain FA1090

34.94

100

0.408
  pilA/pilAII Pseudomonas stutzeri DSM 10701

40.278

100

0.408
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40.559

100

0.408
  pilA Haemophilus influenzae 86-028NP

38.971

95.775

0.373
  pilA Vibrio parahaemolyticus RIMD 2210633

40.31

90.845

0.366