Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   O4D10_RS05735 Genome accession   NZ_CP114795
Coordinates   1345964..1347418 (-) Length   484 a.a.
NCBI ID   WP_033484414.1    Uniprot ID   -
Organism   Xanthomonas citri pv. citri strain CM-BD-sm     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1340964..1352418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4D10_RS05705 (O4D10_05695) pilC 1340978..1342237 (-) 1260 WP_033836749.1 type II secretion system F family protein Machinery gene
  O4D10_RS05710 (O4D10_05700) comP 1342582..1343010 (+) 429 WP_005921364.1 pilin Machinery gene
  O4D10_RS05715 (O4D10_05705) pilA2 1343107..1343520 (+) 414 WP_005921365.1 pilin Machinery gene
  O4D10_RS05720 (O4D10_05710) pilB 1343562..1345298 (+) 1737 WP_386341199.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O4D10_RS05725 (O4D10_05715) pilB 1345395..1345514 (+) 120 WP_005915819.1 hypothetical protein Machinery gene
  O4D10_RS05730 - 1345596..1345778 (+) 183 Protein_1131 hypothetical protein -
  O4D10_RS05735 (O4D10_05720) pilR 1345964..1347418 (-) 1455 WP_033484414.1 sigma-54 dependent transcriptional regulator Regulator
  O4D10_RS05740 (O4D10_05725) - 1347683..1349296 (-) 1614 WP_386341202.1 sensor histidine kinase -
  O4D10_RS05745 (O4D10_05730) sucC 1349528..1350697 (+) 1170 WP_005915812.1 ADP-forming succinate--CoA ligase subunit beta -
  O4D10_RS05750 (O4D10_05735) sucD 1350722..1351597 (+) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  O4D10_RS05755 (O4D10_05740) - 1351726..1351905 (+) 180 WP_386341204.1 hypothetical protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52510.40 Da        Isoelectric Point: 7.0128

>NTDB_id=767153 O4D10_RS05735 WP_033484414.1 1345964..1347418(-) (pilR) [Xanthomonas citri pv. citri strain CM-BD-sm]
MGRHLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPLPPPEQASR
LLGDSSAMEILRATISKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPPGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=767153 O4D10_RS05735 WP_033484414.1 1345964..1347418(-) (pilR) [Xanthomonas citri pv. citri strain CM-BD-sm]
TTGGGCCGCCACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACTG
CTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGTTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACTGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGTGCCATGGAAATCCTGCGCGCCACCATCAGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGTGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCGGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGACGCCTTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCTACC
GACCTGCGCCTGCCCGCGCACGGCGGCCACCGGTTGGCCGCCCCCCCAGGAGGCGCCGCGGCCGAACCGCGCGAAGCCGT
CGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTAAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.043

95.041

0.599
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471