Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   O4D10_RS05725 Genome accession   NZ_CP114795
Coordinates   1345395..1345514 (+) Length   39 a.a.
NCBI ID   WP_005915819.1    Uniprot ID   A0A7S6YV99
Organism   Xanthomonas citri pv. citri strain CM-BD-sm     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1340395..1350514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4D10_RS05705 (O4D10_05695) pilC 1340978..1342237 (-) 1260 WP_033836749.1 type II secretion system F family protein Machinery gene
  O4D10_RS05710 (O4D10_05700) comP 1342582..1343010 (+) 429 WP_005921364.1 pilin Machinery gene
  O4D10_RS05715 (O4D10_05705) pilA2 1343107..1343520 (+) 414 WP_005921365.1 pilin Machinery gene
  O4D10_RS05720 (O4D10_05710) pilB 1343562..1345298 (+) 1737 WP_386341199.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O4D10_RS05725 (O4D10_05715) pilB 1345395..1345514 (+) 120 WP_005915819.1 hypothetical protein Machinery gene
  O4D10_RS05730 - 1345596..1345778 (+) 183 Protein_1131 hypothetical protein -
  O4D10_RS05735 (O4D10_05720) pilR 1345964..1347418 (-) 1455 WP_033484414.1 sigma-54 dependent transcriptional regulator Regulator
  O4D10_RS05740 (O4D10_05725) - 1347683..1349296 (-) 1614 WP_386341202.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4178.84 Da        Isoelectric Point: 9.0113

>NTDB_id=767152 O4D10_RS05725 WP_005915819.1 1345395..1345514(+) (pilB) [Xanthomonas citri pv. citri strain CM-BD-sm]
MQIAEAAQAIGIRDLRQSALMKAAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 120 bp        

>NTDB_id=767152 O4D10_RS05725 WP_005915819.1 1345395..1345514(+) (pilB) [Xanthomonas citri pv. citri strain CM-BD-sm]
ATGCAGATCGCCGAGGCCGCGCAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCGCTGATGAAGGCTGCGCATGGGGT
GACCAGCCTGGCCGAGATCAATCGTGTGACGAAGGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S6YV99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baylyi ADP1

51.282

100

0.513
  pilB Acinetobacter baumannii D1279779

48.718

100

0.487
  pilB Vibrio cholerae strain A1552

45.714

89.744

0.41
  pilB Legionella pneumophila strain ERS1305867

38.462

100

0.385