Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | O4D10_RS05705 | Genome accession | NZ_CP114795 |
| Coordinates | 1340978..1342237 (-) | Length | 419 a.a. |
| NCBI ID | WP_033836749.1 | Uniprot ID | A0A7Z7NHG2 |
| Organism | Xanthomonas citri pv. citri strain CM-BD-sm | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1335978..1347237
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O4D10_RS05695 (O4D10_05685) | coaE | 1339483..1340094 (-) | 612 | WP_386341197.1 | dephospho-CoA kinase | - |
| O4D10_RS05700 (O4D10_05690) | - | 1340108..1340971 (-) | 864 | WP_003491180.1 | A24 family peptidase | - |
| O4D10_RS05705 (O4D10_05695) | pilC | 1340978..1342237 (-) | 1260 | WP_033836749.1 | type II secretion system F family protein | Machinery gene |
| O4D10_RS05710 (O4D10_05700) | comP | 1342582..1343010 (+) | 429 | WP_005921364.1 | pilin | Machinery gene |
| O4D10_RS05715 (O4D10_05705) | pilA2 | 1343107..1343520 (+) | 414 | WP_005921365.1 | pilin | Machinery gene |
| O4D10_RS05720 (O4D10_05710) | pilB | 1343562..1345298 (+) | 1737 | WP_386341199.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| O4D10_RS05725 (O4D10_05715) | pilB | 1345395..1345514 (+) | 120 | WP_005915819.1 | hypothetical protein | Machinery gene |
| O4D10_RS05730 | - | 1345596..1345778 (+) | 183 | Protein_1131 | hypothetical protein | - |
Sequence
Protein
Download Length: 419 a.a. Molecular weight: 45878.36 Da Isoelectric Point: 10.3363
>NTDB_id=767148 O4D10_RS05705 WP_033836749.1 1340978..1342237(-) (pilC) [Xanthomonas citri pv. citri strain CM-BD-sm]
MSVARNVIKKQPADRSNSQMQPFVWEGTDKRGIKMKGEQAARNVNMLRAELRRQGITPTVVKPKPKPLFGAAGKKVGPKD
IAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMRKMVGQIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVVAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVAASRFMISYWWL
MLLVIGGAITGFIFAYKRSPRMQHGMDRLVLKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLGAVVG
MSVARNVIKKQPADRSNSQMQPFVWEGTDKRGIKMKGEQAARNVNMLRAELRRQGITPTVVKPKPKPLFGAAGKKVGPKD
IAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMRKMVGQIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVVAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVAASRFMISYWWL
MLLVIGGAITGFIFAYKRSPRMQHGMDRLVLKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLGAVVG
Nucleotide
Download Length: 1260 bp
>NTDB_id=767148 O4D10_RS05705 WP_033836749.1 1340978..1342237(-) (pilC) [Xanthomonas citri pv. citri strain CM-BD-sm]
ATGTCAGTCGCGCGTAACGTAATCAAAAAACAGCCAGCCGACCGAAGCAACAGCCAGATGCAGCCTTTTGTATGGGAGGG
GACGGATAAGCGTGGCATCAAGATGAAAGGGGAGCAGGCGGCGCGCAATGTGAACATGTTGCGTGCAGAGCTTCGTCGCC
AGGGCATTACGCCCACTGTCGTCAAGCCCAAGCCCAAACCACTTTTTGGCGCTGCCGGCAAAAAAGTGGGCCCTAAGGAC
ATTGCGTTTTTCAGTCGTCAGATGGCAACTATGATGAAGTCCGGCGTTCCCATCGTAGGATCGCTTGAGATCATTGGCGA
GGGGCACAAAAACCCACGAATGAGGAAAATGGTCGGCCAGATAAGGACCGACATTGAAGGCGGCTCTTCACTGCATGAAG
CGATCAGCAAGCATCCGGTACAGTTTGACGAGCTCTACCGCAACCTTGTCCGCGCGGGAGAGGGCGCAGGCGTGCTGGAG
ACAGTCTTAGACACAGTCGCCAATTACAAAGAAAACATTGAGGCCTTGAAAGGCAAGATCAAGAAGGCGCTCTTCTACCC
CGCAATGGTCGTTGCAGTCGCCCTCATTGTTAGCGCCATCTTGCTCATTTTTGTTGTTCCACAGTTCGAAGAAGTCTTCA
AAGGGTTTGGAGCCGAACTTCCCGCGTTCACACAGATGATCGTTGCGGCATCTCGCTTCATGATCAGCTACTGGTGGCTA
ATGCTGCTCGTCATCGGTGGCGCGATTACCGGCTTCATCTTCGCTTACAAGCGCTCACCTCGCATGCAACATGGCATGGA
TCGCCTGGTCTTGAAGGTGCCTGTCATCGGCCAAATTATGCATAACAGTTCCATTGCAAGGTTTGCGCGCACGACCGCCG
TGACCTTCAAGGCTGGCGTTCCCCTCGTGGAAGCACTCGGCATTGTTGCGGGGGCGACTGGTAACAAAGTTTATGAAGAA
GCAGTGCTGCGCATGCGTGACGACGTATCGGTGGGCTATCCAGTCAACATGGCCATGAAGCAGGTCAACCTGTTCCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAGGAAGCAGGCGCACTGGATGCCATGCTGTTTAAGGTTGCTGAGTATTTCG
AGCAGGAGGTCAACAATGCCGTGGATGCGTTGAGCAGCCTGCTTGAACCAATGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA
ATGTCAGTCGCGCGTAACGTAATCAAAAAACAGCCAGCCGACCGAAGCAACAGCCAGATGCAGCCTTTTGTATGGGAGGG
GACGGATAAGCGTGGCATCAAGATGAAAGGGGAGCAGGCGGCGCGCAATGTGAACATGTTGCGTGCAGAGCTTCGTCGCC
AGGGCATTACGCCCACTGTCGTCAAGCCCAAGCCCAAACCACTTTTTGGCGCTGCCGGCAAAAAAGTGGGCCCTAAGGAC
ATTGCGTTTTTCAGTCGTCAGATGGCAACTATGATGAAGTCCGGCGTTCCCATCGTAGGATCGCTTGAGATCATTGGCGA
GGGGCACAAAAACCCACGAATGAGGAAAATGGTCGGCCAGATAAGGACCGACATTGAAGGCGGCTCTTCACTGCATGAAG
CGATCAGCAAGCATCCGGTACAGTTTGACGAGCTCTACCGCAACCTTGTCCGCGCGGGAGAGGGCGCAGGCGTGCTGGAG
ACAGTCTTAGACACAGTCGCCAATTACAAAGAAAACATTGAGGCCTTGAAAGGCAAGATCAAGAAGGCGCTCTTCTACCC
CGCAATGGTCGTTGCAGTCGCCCTCATTGTTAGCGCCATCTTGCTCATTTTTGTTGTTCCACAGTTCGAAGAAGTCTTCA
AAGGGTTTGGAGCCGAACTTCCCGCGTTCACACAGATGATCGTTGCGGCATCTCGCTTCATGATCAGCTACTGGTGGCTA
ATGCTGCTCGTCATCGGTGGCGCGATTACCGGCTTCATCTTCGCTTACAAGCGCTCACCTCGCATGCAACATGGCATGGA
TCGCCTGGTCTTGAAGGTGCCTGTCATCGGCCAAATTATGCATAACAGTTCCATTGCAAGGTTTGCGCGCACGACCGCCG
TGACCTTCAAGGCTGGCGTTCCCCTCGTGGAAGCACTCGGCATTGTTGCGGGGGCGACTGGTAACAAAGTTTATGAAGAA
GCAGTGCTGCGCATGCGTGACGACGTATCGGTGGGCTATCCAGTCAACATGGCCATGAAGCAGGTCAACCTGTTCCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAGGAAGCAGGCGCACTGGATGCCATGCTGTTTAAGGTTGCTGAGTATTTCG
AGCAGGAGGTCAACAATGCCGTGGATGCGTTGAGCAGCCTGCTTGAACCAATGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
54.293 |
94.511 |
0.513 |
| pilC | Acinetobacter baylyi ADP1 |
52.97 |
96.42 |
0.511 |
| pilC | Legionella pneumophila strain ERS1305867 |
51.605 |
96.659 |
0.499 |
| pilC | Acinetobacter baumannii D1279779 |
51.238 |
96.42 |
0.494 |
| pilG | Neisseria gonorrhoeae MS11 |
44.638 |
95.704 |
0.427 |
| pilG | Neisseria meningitidis 44/76-A |
44.14 |
95.704 |
0.422 |
| pilC | Vibrio cholerae strain A1552 |
41.5 |
95.465 |
0.396 |
| pilC | Vibrio campbellii strain DS40M4 |
39.702 |
96.181 |
0.382 |
| pilC | Thermus thermophilus HB27 |
37.905 |
95.704 |
0.363 |