Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | UABAM_RS04975 | Genome accession | NZ_AP019860 |
| Coordinates | 1436521..1437594 (+) | Length | 357 a.a. |
| NCBI ID | WP_152021962.1 | Uniprot ID | - |
| Organism | Candidatus Uabimicrobium amorphum strain SRT547 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1431521..1442594
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UABAM_RS04960 (UABAM_01003) | - | 1432131..1432583 (-) | 453 | WP_151966895.1 | hypothetical protein | - |
| UABAM_RS04965 (UABAM_01004) | - | 1432614..1434668 (+) | 2055 | WP_151966896.1 | plasmid pRiA4b ORF-3 family protein | - |
| UABAM_RS04970 (UABAM_01005) | - | 1434794..1436500 (+) | 1707 | WP_151966897.1 | GspE/PulE family protein | - |
| UABAM_RS04975 (UABAM_01006) | pilT | 1436521..1437594 (+) | 1074 | WP_152021962.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| UABAM_RS04980 (UABAM_01007) | gspE | 1437613..1439316 (+) | 1704 | WP_151966898.1 | type II secretion system ATPase GspE | - |
| UABAM_RS04985 (UABAM_01008) | - | 1439387..1440481 (+) | 1095 | WP_151966899.1 | type II secretion system F family protein | - |
| UABAM_RS04990 (UABAM_01009) | - | 1440644..1441813 (+) | 1170 | WP_173013139.1 | C40 family peptidase | - |
| UABAM_RS04995 (UABAM_01010) | - | 1441833..1442294 (+) | 462 | WP_173013140.1 | HEAT repeat domain-containing protein | - |
Sequence
Protein
Download Length: 357 a.a. Molecular weight: 39739.55 Da Isoelectric Point: 7.0816
>NTDB_id=74489 UABAM_RS04975 WP_152021962.1 1436521..1437594(+) (pilT) [Candidatus Uabimicrobium amorphum strain SRT547]
MNQLLQLVIDKGGSDLHLTVGRPPVVRLHGRMRTLNTPPLTPEDTNDLMKSITGERYQQELDELGSTDFGFAFGEQARFR
SAVFKQRGNIGLVLRQISNTLLTMEQIGLSHNIKSLLAKPRGMILVTGPTGSGKSTTLASMINFINEEHDHHIITIEDPI
EFYHEHKKSIITQREVGVDVDSFSEALRRALRMDPDVILVGEMRDLETISAAITAAETGHLVFGTLHTTGAAKTIDRVID
AFPQAQQEQVRVQLAGSLVAVISQLLVPRCDKQGVIAAHEIMIVTSAISNLIRENKTFRIDSSIQTGKKYGMKLLDDTLF
RYFAEKKIKYSDAMQRAQDPIALQERIKQASEQAQSQ
MNQLLQLVIDKGGSDLHLTVGRPPVVRLHGRMRTLNTPPLTPEDTNDLMKSITGERYQQELDELGSTDFGFAFGEQARFR
SAVFKQRGNIGLVLRQISNTLLTMEQIGLSHNIKSLLAKPRGMILVTGPTGSGKSTTLASMINFINEEHDHHIITIEDPI
EFYHEHKKSIITQREVGVDVDSFSEALRRALRMDPDVILVGEMRDLETISAAITAAETGHLVFGTLHTTGAAKTIDRVID
AFPQAQQEQVRVQLAGSLVAVISQLLVPRCDKQGVIAAHEIMIVTSAISNLIRENKTFRIDSSIQTGKKYGMKLLDDTLF
RYFAEKKIKYSDAMQRAQDPIALQERIKQASEQAQSQ
Nucleotide
Download Length: 1074 bp
>NTDB_id=74489 UABAM_RS04975 WP_152021962.1 1436521..1437594(+) (pilT) [Candidatus Uabimicrobium amorphum strain SRT547]
ATGAATCAACTGTTACAGTTAGTAATTGACAAAGGTGGCTCTGACTTACATCTTACGGTTGGGCGTCCTCCTGTTGTGCG
TTTACACGGAAGAATGCGAACTCTAAATACCCCTCCTTTGACACCAGAAGATACTAATGACTTAATGAAAAGTATCACTG
GGGAACGTTATCAACAAGAGTTGGACGAATTGGGAAGCACTGACTTCGGTTTTGCGTTTGGTGAGCAGGCTCGTTTTCGT
TCGGCTGTTTTTAAACAAAGAGGTAACATTGGATTAGTGTTGCGCCAAATATCCAATACACTCCTGACAATGGAACAAAT
CGGTTTGTCGCATAACATTAAAAGTTTATTGGCGAAACCTCGAGGAATGATACTTGTAACCGGTCCTACAGGAAGTGGGA
AGTCGACGACTTTGGCTTCGATGATTAACTTTATCAACGAAGAGCATGATCATCACATTATTACTATTGAAGATCCTATT
GAGTTTTATCACGAACACAAGAAATCTATTATCACCCAGCGTGAAGTAGGTGTAGATGTTGATTCGTTTTCCGAGGCATT
GCGACGTGCTTTGCGTATGGACCCCGATGTAATTCTCGTTGGTGAGATGCGCGACCTAGAAACAATCAGTGCTGCCATTA
CCGCAGCGGAAACAGGACACCTTGTTTTTGGGACACTTCACACCACGGGAGCAGCAAAAACAATCGACCGTGTTATCGAT
GCTTTCCCTCAAGCACAACAGGAACAAGTTCGGGTACAGTTGGCAGGATCTCTCGTCGCTGTAATATCGCAGTTACTAGT
ACCACGATGTGATAAGCAAGGAGTTATCGCTGCTCATGAGATTATGATCGTAACCTCAGCTATTTCAAACTTAATCCGTG
AAAATAAAACATTTCGTATAGACTCTTCTATACAAACGGGTAAAAAATATGGTATGAAACTGCTTGATGATACATTGTTT
CGTTACTTTGCCGAAAAGAAGATAAAGTACTCGGATGCAATGCAACGAGCGCAAGATCCTATCGCTCTACAGGAACGAAT
CAAGCAGGCAAGTGAACAGGCTCAGTCTCAATAA
ATGAATCAACTGTTACAGTTAGTAATTGACAAAGGTGGCTCTGACTTACATCTTACGGTTGGGCGTCCTCCTGTTGTGCG
TTTACACGGAAGAATGCGAACTCTAAATACCCCTCCTTTGACACCAGAAGATACTAATGACTTAATGAAAAGTATCACTG
GGGAACGTTATCAACAAGAGTTGGACGAATTGGGAAGCACTGACTTCGGTTTTGCGTTTGGTGAGCAGGCTCGTTTTCGT
TCGGCTGTTTTTAAACAAAGAGGTAACATTGGATTAGTGTTGCGCCAAATATCCAATACACTCCTGACAATGGAACAAAT
CGGTTTGTCGCATAACATTAAAAGTTTATTGGCGAAACCTCGAGGAATGATACTTGTAACCGGTCCTACAGGAAGTGGGA
AGTCGACGACTTTGGCTTCGATGATTAACTTTATCAACGAAGAGCATGATCATCACATTATTACTATTGAAGATCCTATT
GAGTTTTATCACGAACACAAGAAATCTATTATCACCCAGCGTGAAGTAGGTGTAGATGTTGATTCGTTTTCCGAGGCATT
GCGACGTGCTTTGCGTATGGACCCCGATGTAATTCTCGTTGGTGAGATGCGCGACCTAGAAACAATCAGTGCTGCCATTA
CCGCAGCGGAAACAGGACACCTTGTTTTTGGGACACTTCACACCACGGGAGCAGCAAAAACAATCGACCGTGTTATCGAT
GCTTTCCCTCAAGCACAACAGGAACAAGTTCGGGTACAGTTGGCAGGATCTCTCGTCGCTGTAATATCGCAGTTACTAGT
ACCACGATGTGATAAGCAAGGAGTTATCGCTGCTCATGAGATTATGATCGTAACCTCAGCTATTTCAAACTTAATCCGTG
AAAATAAAACATTTCGTATAGACTCTTCTATACAAACGGGTAAAAAATATGGTATGAAACTGCTTGATGATACATTGTTT
CGTTACTTTGCCGAAAAGAAGATAAAGTACTCGGATGCAATGCAACGAGCGCAAGATCCTATCGCTCTACAGGAACGAAT
CAAGCAGGCAAGTGAACAGGCTCAGTCTCAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
53.529 |
95.238 |
0.51 |
| pilT | Acinetobacter baumannii D1279779 |
52.059 |
95.238 |
0.496 |
| pilT | Acinetobacter baumannii strain A118 |
52.059 |
95.238 |
0.496 |
| pilT | Acinetobacter nosocomialis M2 |
51.765 |
95.238 |
0.493 |
| pilT | Pseudomonas aeruginosa PAK |
51.471 |
95.238 |
0.49 |
| pilT | Pseudomonas stutzeri DSM 10701 |
51.176 |
95.238 |
0.487 |
| pilT | Acinetobacter baylyi ADP1 |
50.588 |
95.238 |
0.482 |
| pilT | Neisseria meningitidis 8013 |
50 |
95.238 |
0.476 |
| pilT | Neisseria gonorrhoeae MS11 |
49.706 |
95.238 |
0.473 |
| pilT | Legionella pneumophila strain Lp02 |
50.473 |
88.796 |
0.448 |
| pilT | Legionella pneumophila strain ERS1305867 |
50.473 |
88.796 |
0.448 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
50 |
87.955 |
0.44 |
| pilT | Vibrio cholerae strain A1552 |
50 |
87.955 |
0.44 |
| pilU | Acinetobacter baylyi ADP1 |
40.227 |
98.88 |
0.398 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40 |
98.039 |
0.392 |