Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   NQZ70_RS28580 Genome accession   NZ_CP102233
Coordinates   7943234..7944373 (+) Length   379 a.a.
NCBI ID   WP_129577032.1    Uniprot ID   -
Organism   Sorangium sp. Soce836     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 7938234..7949373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ70_RS28560 (NQZ70_05766) - 7938540..7938836 (+) 297 WP_129577028.1 hypothetical protein -
  NQZ70_RS28565 (NQZ70_05767) - 7938850..7940199 (-) 1350 WP_129577029.1 serine/threonine-protein kinase -
  NQZ70_RS28570 (NQZ70_05768) - 7940196..7941422 (-) 1227 WP_129577030.1 FHA domain-containing protein -
  NQZ70_RS28575 (NQZ70_05769) pilB 7941529..7943229 (+) 1701 WP_129577031.1 type IV-A pilus assembly ATPase PilB -
  NQZ70_RS28580 (NQZ70_05770) pilT 7943234..7944373 (+) 1140 WP_129577032.1 type IV pilus twitching motility protein PilT Machinery gene
  NQZ70_RS28585 (NQZ70_05771) lexA 7944577..7945269 (+) 693 WP_061627745.1 transcriptional repressor LexA -
  NQZ70_RS28590 (NQZ70_05772) - 7945445..7945723 (+) 279 WP_129577033.1 DUF4398 domain-containing protein -
  NQZ70_RS28595 (NQZ70_05773) - 7945720..7946883 (+) 1164 WP_129577034.1 OmpA family protein -
  NQZ70_RS28600 (NQZ70_05774) - 7947126..7948745 (+) 1620 WP_237244137.1 hypothetical protein -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 42030.68 Da        Isoelectric Point: 6.9232

>NTDB_id=715399 NQZ70_RS28580 WP_129577032.1 7943234..7944373(+) (pilT) [Sorangium sp. Soce836]
MTTELVGQQEGLRYTLQQLLRAMVEKGASDMHITSGTPPLLRIDGTVVPLKLPPLMPSDTRQLCYSVLSEEQVAAFEQRN
ELDLSFGMKGLARFRANIYMQRGAVAAAFRQIPFRIMNFDELGLPPVVLDIAAKPRGLVLVTGPTGSGKTTTLASIIDKI
NSEQRLHILTIEDPIEYLHPHKLSLVNQREIGSDTASFKDALRYALRQDPDVVLVGEMRDLETVESALTIAETGHLVFAT
LHTNSAISTINRIIDVFPPHQQSQVRQQLSFTLVAVMTQLLLPRANGPGRVMAMEVMIPNAAIRNLVREDKLHQIYSQMQ
VGQAGSGMQTMAQSLVSLYQRRMISLEEMFAAAADPDEIRAMLEPRPAMSSRNNLPKQP

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=715399 NQZ70_RS28580 WP_129577032.1 7943234..7944373(+) (pilT) [Sorangium sp. Soce836]
ATGACCACGGAGCTCGTCGGACAGCAGGAGGGCCTCAGGTACACGCTCCAGCAGCTCCTCCGCGCGATGGTGGAGAAGGG
CGCGAGCGACATGCACATCACGAGCGGCACGCCGCCGCTCCTGCGCATCGACGGCACGGTGGTGCCGCTCAAGCTCCCGC
CGCTCATGCCGAGCGACACGAGGCAGCTCTGCTACTCGGTGCTGAGCGAGGAGCAGGTGGCGGCATTCGAGCAGCGGAAC
GAGCTCGATCTGTCGTTCGGCATGAAGGGGCTCGCCCGCTTCCGCGCGAACATCTACATGCAGCGCGGCGCCGTGGCGGC
CGCCTTCCGGCAGATCCCCTTCCGGATCATGAACTTCGACGAGCTGGGGCTGCCGCCGGTCGTGCTCGACATCGCCGCCA
AGCCGCGCGGCCTCGTGCTCGTGACGGGCCCGACCGGCTCGGGCAAGACGACCACGCTCGCGAGCATCATCGACAAGATC
AACTCCGAGCAGCGCCTCCACATCCTCACGATCGAGGACCCGATCGAGTACCTGCACCCGCACAAGCTCTCGCTCGTGAA
CCAGCGCGAGATCGGCTCCGACACCGCGTCGTTCAAGGACGCCCTGCGCTACGCCCTGCGCCAGGATCCGGACGTCGTGC
TCGTCGGCGAGATGCGCGACCTGGAGACCGTCGAGTCGGCGCTGACGATCGCCGAGACGGGCCACCTCGTGTTCGCCACG
CTCCACACGAACTCGGCGATCTCGACGATCAACCGCATCATCGACGTCTTCCCGCCGCACCAGCAGTCGCAGGTGCGGCA
GCAGCTGTCGTTCACGCTCGTCGCCGTGATGACCCAGCTGCTCCTGCCGCGCGCGAACGGCCCGGGGCGCGTCATGGCGA
TGGAGGTCATGATCCCGAACGCCGCGATCCGGAACCTCGTCCGCGAGGACAAGCTCCACCAGATCTACTCGCAGATGCAG
GTGGGCCAGGCCGGCAGCGGGATGCAGACGATGGCGCAGTCGCTCGTCTCGCTCTACCAGCGCCGGATGATCTCGCTGGA
GGAGATGTTCGCCGCCGCCGCCGACCCCGACGAGATCCGGGCGATGCTCGAGCCCCGCCCGGCCATGAGCTCGCGGAACA
ACCTCCCGAAGCAGCCCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(22-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.814

90.765

0.507
  pilT Legionella pneumophila strain Lp02

52.959

89.182

0.472
  pilT Legionella pneumophila strain ERS1305867

52.959

89.182

0.472
  pilT Acinetobacter nosocomialis M2

50.585

90.237

0.456
  pilT Acinetobacter baumannii D1279779

50.585

90.237

0.456
  pilT Acinetobacter baumannii strain A118

50.585

90.237

0.456
  pilT Acinetobacter baylyi ADP1

50.585

90.237

0.456
  pilT Pseudomonas stutzeri DSM 10701

49.855

91.029

0.454
  pilT Pseudomonas aeruginosa PAK

49.854

90.501

0.451
  pilT Neisseria meningitidis 8013

50

87.599

0.438
  pilT Neisseria gonorrhoeae MS11

49.699

87.599

0.435
  pilT Vibrio cholerae strain A1552

49.401

88.127

0.435
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.401

88.127

0.435
  pilU Vibrio cholerae strain A1552

40.171

92.612

0.372
  pilU Pseudomonas stutzeri DSM 10701

39.828

92.084

0.367