Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | ALSL_RS11870 | Genome accession | NZ_AP018560 |
| Coordinates | 2537543..2538655 (+) | Length | 370 a.a. |
| NCBI ID | WP_161970960.1 | Uniprot ID | A0A2Z6E7C8 |
| Organism | Aerosticca soli strain Dysh456 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2532543..2543655
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ALSL_RS11850 (ALSL_2383) | - | 2534261..2535631 (-) | 1371 | WP_126539439.1 | pyridoxal-phosphate dependent enzyme | - |
| ALSL_RS11855 (ALSL_2385) | - | 2535762..2535989 (-) | 228 | WP_126539441.1 | YdcH family protein | - |
| ALSL_RS11860 (ALSL_2386) | - | 2536256..2536855 (-) | 600 | WP_126539443.1 | hypothetical protein | - |
| ALSL_RS11865 (ALSL_2387) | - | 2536852..2537454 (-) | 603 | WP_126539445.1 | DUF4398 domain-containing protein | - |
| ALSL_RS11870 (ALSL_2388) | pilU | 2537543..2538655 (+) | 1113 | WP_161970960.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ALSL_RS11875 (ALSL_2389) | maiA | 2538660..2539319 (-) | 660 | WP_126539447.1 | maleylacetoacetate isomerase | - |
| ALSL_RS11880 (ALSL_2390) | - | 2539502..2540680 (+) | 1179 | WP_126539449.1 | phosphoglycerate kinase | - |
| ALSL_RS11885 (ALSL_2391) | tkt | 2540756..2542759 (-) | 2004 | WP_126539451.1 | transketolase | - |
Sequence
Protein
Download Length: 370 a.a. Molecular weight: 41042.31 Da Isoelectric Point: 6.5101
>NTDB_id=70072 ALSL_RS11870 WP_161970960.1 2537543..2538655(+) (pilU) [Aerosticca soli strain Dysh456]
MDIGYFLKLMVDKGASDMFLTTGAPVNIKVEGRLYPLGNTGLPGGMVKKIAYSLMDEGQVPQFERDLELNMALAVKEAGR
FRINVFKQRGEVGMVIRAIKSEIPTIDQLQLPAIFRDLIMEQRGLILVVGATGSGKSTTLAAMIDHRNASGPGHILTIED
PIEYLHRHKRSIVNQREVGLDTHSYHEALRNAMREAPDVIMIGEIRDTETMEAAIAFSETGHLCLATLHSNNADQTLERI
LNFFPESAHKNVLMNLALNLKAVISQRLVTGKDGRRLPATEVLLNTPLIRDMIRRGQIHEIKEAMERSLQEGMQTFDQSL
YRLYKEGRIELEEALAKADSRDGLALKVRLSEGAGENAALAGQDPYGLGF
MDIGYFLKLMVDKGASDMFLTTGAPVNIKVEGRLYPLGNTGLPGGMVKKIAYSLMDEGQVPQFERDLELNMALAVKEAGR
FRINVFKQRGEVGMVIRAIKSEIPTIDQLQLPAIFRDLIMEQRGLILVVGATGSGKSTTLAAMIDHRNASGPGHILTIED
PIEYLHRHKRSIVNQREVGLDTHSYHEALRNAMREAPDVIMIGEIRDTETMEAAIAFSETGHLCLATLHSNNADQTLERI
LNFFPESAHKNVLMNLALNLKAVISQRLVTGKDGRRLPATEVLLNTPLIRDMIRRGQIHEIKEAMERSLQEGMQTFDQSL
YRLYKEGRIELEEALAKADSRDGLALKVRLSEGAGENAALAGQDPYGLGF
Nucleotide
Download Length: 1113 bp
>NTDB_id=70072 ALSL_RS11870 WP_161970960.1 2537543..2538655(+) (pilU) [Aerosticca soli strain Dysh456]
GTGGACATCGGCTATTTCCTGAAACTCATGGTCGACAAGGGCGCGTCGGACATGTTCCTGACCACCGGCGCGCCGGTGAA
CATCAAGGTCGAAGGCAGGCTCTATCCGCTCGGCAACACCGGCCTGCCCGGCGGCATGGTCAAGAAGATCGCCTATTCGC
TGATGGACGAGGGCCAGGTGCCGCAGTTCGAGCGCGATCTGGAACTCAACATGGCGCTGGCGGTGAAGGAGGCCGGCCGC
TTCCGCATCAACGTGTTCAAGCAGCGCGGCGAAGTGGGCATGGTGATCCGCGCGATCAAGAGCGAGATTCCCACCATCGA
CCAGCTGCAGCTGCCGGCGATCTTCCGCGACCTGATCATGGAGCAGCGCGGGTTGATCCTGGTGGTCGGCGCCACCGGCT
CGGGCAAGTCGACCACGCTGGCGGCGATGATCGACCACCGCAACGCGAGCGGTCCCGGGCACATCCTCACCATCGAGGAT
CCGATCGAATACCTGCACCGGCACAAGCGCTCGATCGTCAACCAGCGCGAAGTCGGGCTGGATACGCACAGCTACCACGA
GGCGCTGCGCAACGCGATGCGCGAGGCGCCGGACGTGATCATGATCGGCGAGATCCGCGACACCGAGACGATGGAAGCGG
CGATCGCCTTCTCCGAGACCGGGCATCTGTGCCTGGCCACGCTGCATTCCAACAATGCCGACCAGACGCTGGAGCGCATC
CTCAACTTCTTTCCCGAATCGGCGCACAAGAACGTGCTGATGAACCTCGCGCTCAATCTCAAGGCGGTGATCAGCCAGCG
CCTGGTCACCGGCAAGGACGGCCGCCGGCTGCCGGCCACCGAGGTGCTGCTCAACACGCCGCTGATCCGCGACATGATCC
GCCGCGGCCAGATCCACGAGATCAAGGAGGCGATGGAGCGCAGCCTGCAGGAAGGCATGCAGACCTTCGACCAGTCGCTC
TACCGGCTCTACAAGGAAGGTCGCATCGAGCTCGAGGAGGCGCTGGCCAAGGCCGATTCGCGCGACGGCCTGGCGCTCAA
GGTGCGCCTGTCCGAGGGCGCCGGCGAAAACGCCGCGCTGGCCGGGCAGGATCCCTACGGGCTGGGGTTCTGA
GTGGACATCGGCTATTTCCTGAAACTCATGGTCGACAAGGGCGCGTCGGACATGTTCCTGACCACCGGCGCGCCGGTGAA
CATCAAGGTCGAAGGCAGGCTCTATCCGCTCGGCAACACCGGCCTGCCCGGCGGCATGGTCAAGAAGATCGCCTATTCGC
TGATGGACGAGGGCCAGGTGCCGCAGTTCGAGCGCGATCTGGAACTCAACATGGCGCTGGCGGTGAAGGAGGCCGGCCGC
TTCCGCATCAACGTGTTCAAGCAGCGCGGCGAAGTGGGCATGGTGATCCGCGCGATCAAGAGCGAGATTCCCACCATCGA
CCAGCTGCAGCTGCCGGCGATCTTCCGCGACCTGATCATGGAGCAGCGCGGGTTGATCCTGGTGGTCGGCGCCACCGGCT
CGGGCAAGTCGACCACGCTGGCGGCGATGATCGACCACCGCAACGCGAGCGGTCCCGGGCACATCCTCACCATCGAGGAT
CCGATCGAATACCTGCACCGGCACAAGCGCTCGATCGTCAACCAGCGCGAAGTCGGGCTGGATACGCACAGCTACCACGA
GGCGCTGCGCAACGCGATGCGCGAGGCGCCGGACGTGATCATGATCGGCGAGATCCGCGACACCGAGACGATGGAAGCGG
CGATCGCCTTCTCCGAGACCGGGCATCTGTGCCTGGCCACGCTGCATTCCAACAATGCCGACCAGACGCTGGAGCGCATC
CTCAACTTCTTTCCCGAATCGGCGCACAAGAACGTGCTGATGAACCTCGCGCTCAATCTCAAGGCGGTGATCAGCCAGCG
CCTGGTCACCGGCAAGGACGGCCGCCGGCTGCCGGCCACCGAGGTGCTGCTCAACACGCCGCTGATCCGCGACATGATCC
GCCGCGGCCAGATCCACGAGATCAAGGAGGCGATGGAGCGCAGCCTGCAGGAAGGCATGCAGACCTTCGACCAGTCGCTC
TACCGGCTCTACAAGGAAGGTCGCATCGAGCTCGAGGAGGCGCTGGCCAAGGCCGATTCGCGCGACGGCCTGGCGCTCAA
GGTGCGCCTGTCCGAGGGCGCCGGCGAAAACGCCGCGCTGGCCGGGCAGGATCCCTACGGGCTGGGGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
50.959 |
98.649 |
0.503 |
| pilU | Vibrio cholerae strain A1552 |
49.189 |
100 |
0.492 |
| pilU | Acinetobacter baylyi ADP1 |
50.559 |
96.757 |
0.489 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
45.723 |
91.622 |
0.419 |
| pilT | Acinetobacter baylyi ADP1 |
42.353 |
91.892 |
0.389 |
| pilT | Acinetobacter nosocomialis M2 |
41.42 |
91.351 |
0.378 |
| pilT | Acinetobacter baumannii D1279779 |
41.42 |
91.351 |
0.378 |
| pilT | Acinetobacter baumannii strain A118 |
41.42 |
91.351 |
0.378 |
| pilT | Pseudomonas aeruginosa PAK |
41.42 |
91.351 |
0.378 |
| pilT | Pseudomonas stutzeri DSM 10701 |
41.124 |
91.351 |
0.376 |
| pilT | Legionella pneumophila strain Lp02 |
41.641 |
88.919 |
0.37 |
| pilT | Legionella pneumophila strain ERS1305867 |
41.641 |
88.919 |
0.37 |
| pilT | Vibrio cholerae strain A1552 |
40.356 |
91.081 |
0.368 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
40.356 |
91.081 |
0.368 |
| pilT | Neisseria meningitidis 8013 |
38.617 |
93.784 |
0.362 |