Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   M1R55_RS06890 Genome accession   NZ_CP097149
Coordinates   1420043..1421326 (-) Length   427 a.a.
NCBI ID   WP_249393940.1    Uniprot ID   -
Organism   Deinococcus sp. QL22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1415043..1426326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1R55_RS06875 (M1R55_06875) clpP 1415237..1415848 (+) 612 WP_157451025.1 ATP-dependent Clp protease proteolytic subunit -
  M1R55_RS06880 (M1R55_06880) clpX 1415845..1417089 (+) 1245 WP_249393938.1 ATP-dependent Clp protease ATP-binding subunit ClpX -
  M1R55_RS06885 (M1R55_06885) lon 1417280..1419712 (+) 2433 WP_249393939.1 endopeptidase La -
  M1R55_RS06890 (M1R55_06890) pilT 1420043..1421326 (-) 1284 WP_249393940.1 type IV pilus twitching motility protein PilT Machinery gene
  M1R55_RS06895 (M1R55_06895) pilB 1421385..1424054 (-) 2670 WP_249393941.1 type II/IV secretion system protein Machinery gene
  M1R55_RS06900 (M1R55_06900) - 1424227..1424784 (-) 558 WP_249393942.1 YqeG family HAD IIIA-type phosphatase -
  M1R55_RS06905 (M1R55_06905) pgeF 1424781..1425551 (-) 771 WP_249393943.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 427 a.a.        Molecular weight: 45980.27 Da        Isoelectric Point: 7.5601

>NTDB_id=687486 M1R55_RS06890 WP_249393940.1 1420043..1421326(-) (pilT) [Deinococcus sp. QL22]
MTQAPVDITDILRLATEKGASDVILTVGLPPQLKLHGVYDGHSMPELAPTDTRKLMYSMMNERQQRTFEERRELDFSFAL
GEKARFRVNAFMQRGNVGGVLRLIPTQIKSAQEMGLPQNIVDIANAPRGLVLVTGPTGSGKSTTLAAMIDYINTTRKLHI
VTIEDPIEFMHTHKQSIINQREVGSDTMSFNDALRAALRQAPDVILVGEMRDYETIKAAVTAAETGHLVMGTLHTNSAPE
SIDRIVDVFPEEQQAQIRVQLANNLVAVMTQQLLPRADGAGRVLAYELLLANPAVRSLIREGKTYQIVSTMQTGAREGMV
TMDAYLANLYRRRIIAYDIGLERSIDPKEFARLANDTTTSLGAAANLGPPSGGAGAAGGYGGKPAGGTTQGGYGAGREDA
GRGGNSTDTRTTSTTLPATGRTPFGRG

Nucleotide


Download         Length: 1284 bp        

>NTDB_id=687486 M1R55_RS06890 WP_249393940.1 1420043..1421326(-) (pilT) [Deinococcus sp. QL22]
ATGACTCAGGCTCCTGTAGACATTACCGATATTCTCCGCCTCGCCACCGAAAAGGGCGCGTCCGACGTGATCCTGACGGT
GGGCTTGCCGCCGCAACTGAAGCTGCACGGCGTCTATGACGGCCACAGCATGCCCGAACTGGCCCCCACCGACACCCGCA
AACTGATGTATTCCATGATGAACGAACGTCAGCAGCGCACCTTCGAAGAACGGCGCGAACTGGATTTCAGCTTCGCTCTG
GGAGAAAAAGCCCGTTTCCGCGTCAACGCCTTTATGCAGCGCGGCAATGTAGGCGGCGTCCTGCGACTGATTCCGACCCA
GATCAAGAGCGCACAGGAAATGGGCCTGCCCCAAAATATCGTGGACATCGCCAATGCCCCGCGTGGATTGGTGCTGGTCA
CGGGGCCGACTGGATCGGGCAAAAGCACCACGCTGGCCGCCATGATCGACTACATCAACACGACCCGCAAGCTGCACATC
GTGACGATTGAAGACCCGATCGAGTTCATGCACACGCACAAACAGAGCATCATCAATCAGCGCGAAGTCGGCTCGGACAC
CATGAGTTTCAACGACGCCCTCCGCGCCGCCCTGCGCCAAGCGCCCGACGTGATTCTGGTGGGCGAAATGCGCGACTACG
AAACCATCAAGGCCGCCGTGACCGCCGCCGAAACTGGGCACTTGGTGATGGGTACGCTGCACACCAACTCTGCGCCGGAA
TCTATTGACCGAATCGTGGACGTGTTCCCCGAAGAACAGCAGGCACAGATCCGGGTGCAGCTCGCCAACAACCTCGTGGC
CGTGATGACCCAGCAACTGTTGCCGCGTGCCGACGGTGCGGGCCGCGTGCTGGCCTACGAACTGCTGCTGGCCAATCCTG
CCGTGCGTTCACTGATCCGCGAGGGCAAAACCTACCAGATCGTGTCGACGATGCAGACCGGGGCACGGGAAGGCATGGTC
ACGATGGACGCCTACCTTGCCAACCTGTACCGCCGCCGCATCATCGCCTACGACATCGGCCTGGAACGGTCTATTGATCC
CAAAGAGTTTGCCCGCCTTGCCAACGACACCACCACCAGTTTGGGTGCGGCAGCCAATCTCGGCCCTCCCAGTGGCGGTG
CGGGAGCAGCCGGTGGCTACGGCGGCAAACCTGCGGGCGGCACAACACAGGGCGGATACGGCGCGGGCCGGGAAGACGCG
GGGCGCGGCGGCAACAGCACCGATACGCGAACCACGAGTACCACTTTGCCCGCCACCGGGCGCACGCCGTTTGGCCGGGG
ATAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(15-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

76.773

95.785

0.735
  pilT Acinetobacter nosocomialis M2

51.304

80.796

0.415
  pilT Acinetobacter baumannii D1279779

51.304

80.796

0.415
  pilT Acinetobacter baumannii strain A118

51.304

80.796

0.415
  pilT Neisseria meningitidis 8013

51.603

80.328

0.415
  pilT Acinetobacter baylyi ADP1

53.03

77.283

0.41
  pilT Neisseria gonorrhoeae MS11

51.327

79.391

0.407
  pilT Pseudomonas stutzeri DSM 10701

50.145

80.796

0.405
  pilT Pseudomonas aeruginosa PAK

49.855

80.796

0.403
  pilT Legionella pneumophila strain Lp02

49.565

80.796

0.4
  pilT Legionella pneumophila strain ERS1305867

49.565

80.796

0.4
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.133

81.03

0.398
  pilT Vibrio cholerae strain A1552

49.133

81.03

0.398
  pilU Pseudomonas stutzeri DSM 10701

43.662

83.138

0.363