Detailed information NTG0687487

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: M1R55_RS06895
• Genome accession: NZ_CP097149
• Coordinates: 1421385..1424054 (-)
• Length: 889 a.a.
• NCBI ID: WP_249393941.1
• Uniprot ID: -
• Organism: Deinococcus sp. QL22
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1416385..1429054

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M1R55_RS06885 (M1R55_06885)	lon	1417280..1419712 (+)	2433	WP_249393939.1	endopeptidase La	-
M1R55_RS06890 (M1R55_06890)	pilT	1420043..1421326 (-)	1284	WP_249393940.1	type IV pilus twitching motility protein PilT	Machinery gene
M1R55_RS06895 (M1R55_06895)	pilB	1421385..1424054 (-)	2670	WP_249393941.1	type II/IV secretion system protein	Machinery gene
M1R55_RS06900 (M1R55_06900)	-	1424227..1424784 (-)	558	WP_249393942.1	YqeG family HAD IIIA-type phosphatase	-
M1R55_RS06905 (M1R55_06905)	pgeF	1424781..1425551 (-)	771	WP_249393943.1	peptidoglycan editing factor PgeF	-
M1R55_RS06910 (M1R55_06910)	-	1425692..1426651 (-)	960	WP_249393944.1	leucine-rich repeat domain-containing protein	-
M1R55_RS06915 (M1R55_06915)	-	1426676..1427221 (-)	546	WP_249393945.1	AAA family ATPase	-
M1R55_RS06920 (M1R55_06920)	-	1427218..1427733 (-)	516	WP_249393946.1	AAA family ATPase	-

Sequence

Protein

• Length: 889 a.a.
• Molecular weight: 96800.09 Da
• Isoelectric Point: 4.8473

>NTDB_id=687487 M1R55_RS06895 WP_249393941.1 1421385..1424054(-) (pilB) [Deinococcus sp. QL22]
MALSIGDRRLGAILLEQGYVNDTDLQRALVRHAEIGGRLADILIDTGLVGEKRIARAIEEALGIPLVNLLVVTPEEAALK
SVQAQTALASQAFPFAIDGGTLRVALVDPLSSMALEALEDDSGLMIEPYQALRDQIMWAMATHYPELGITPALPDEIGEG
GGSMLGQRLMGRGLINDAQLQVALDVQQQTGEALGGTLIAQQIITEDQLYESLAEQTGTVYLRNPRDFQPTEDVLGSMLR
ADALRLNAVPVDESEQGVTVVASDPRKREDIEALVGRTVQLILAKPKDVELLIERFYPQRGRLGEQMVQQGSLSRAQLRE
ALHVQAREGKVKPLGEVIMELGFAGADEIDVALQKQNAGGGRLEDTLVQSGKLSPEMLARSLAAQLGYEFLDPVQNPPDS
KVALMIPEGTARRYGVVPVRLQGESLVVAMKDPRNVFALDDLKLITGRDIMPAVMAEKDIIRLIERYFGNKDMANLNQEL
ANLSSKRESKKQEELDLSVGLDDNAVVRVVDNLIREAALQEASDIHIEPTDSALRIRYRVDGVLREQNELPKGSAQSILA
RIKIMGNLDISERRVPQDGRVRFKKGSIDIDLRLSTLPTVYGEKAVMRLLQKAANIPEVENLGFSDYNFPRFLDLIEKPY
GIFLVTGPTGSGKSFTSFSTLKRIARPEKNTTTIEDPVEYEIPGIMQSQVNPVAGMTFARALRAFLRQDPDIIFVGEIRD
SETAKIAVEAALTGHMVLATLHTNDAPGAVTRLDEMGVEGFNIGASLIGVLGQRLVRKVCPDCKAPTNADPDVLRRLGIS
ERELRGGALVRGAGCPRCGGTGYKGRTGLHELMVLDDALRTAIGSGKPAVELREVAMNQSGMRTMRQDGIEKALKGLTTL
EEVLAVTSN

Nucleotide

• Length: 2670 bp

>NTDB_id=687487 M1R55_RS06895 WP_249393941.1 1421385..1424054(-) (pilB) [Deinococcus sp. QL22]
GTGGCTCTTTCTATTGGTGACCGGCGCCTAGGCGCAATTTTGCTCGAACAGGGGTATGTCAACGACACCGACCTGCAACG
CGCCCTCGTGCGGCATGCCGAAATCGGGGGCCGACTGGCCGATATTCTGATCGACACCGGGCTGGTGGGCGAAAAACGCA
TTGCGCGGGCCATCGAGGAAGCCCTGGGAATTCCGCTGGTGAATCTGCTGGTGGTCACGCCGGAAGAGGCGGCCCTGAAA
TCGGTGCAGGCCCAGACGGCACTGGCTTCTCAGGCGTTCCCGTTTGCCATCGATGGCGGCACCCTGCGCGTGGCCCTCGT
CGATCCGCTGTCGAGCATGGCGCTGGAAGCCCTCGAAGACGACAGCGGCCTGATGATCGAACCGTACCAGGCGCTCCGCG
ACCAGATCATGTGGGCGATGGCAACCCATTACCCCGAACTGGGGATTACGCCTGCCCTGCCGGATGAGATCGGAGAGGGC
GGCGGCAGCATGTTGGGCCAACGCCTGATGGGACGCGGCCTGATCAACGACGCGCAGTTGCAAGTGGCCCTGGACGTGCA
GCAGCAGACCGGAGAGGCGCTGGGCGGCACCCTGATTGCCCAGCAGATCATTACCGAAGACCAACTGTACGAGTCGCTGG
CCGAGCAGACCGGCACGGTGTACCTCAGAAATCCACGCGATTTCCAGCCCACCGAAGACGTGCTGGGCAGCATGTTGCGG
GCCGACGCGCTGCGCCTGAACGCCGTGCCCGTAGACGAATCCGAGCAGGGCGTAACGGTAGTCGCCAGCGATCCGCGCAA
ACGCGAAGACATCGAGGCGTTGGTGGGCCGCACCGTTCAACTGATTCTGGCCAAGCCAAAAGACGTGGAACTCCTGATCG
AGCGCTTTTATCCGCAGCGCGGGCGCTTGGGCGAACAGATGGTGCAGCAGGGCAGCCTCTCGCGGGCGCAACTGCGGGAA
GCGCTGCATGTGCAGGCCCGCGAGGGCAAGGTCAAGCCGCTGGGCGAAGTGATTATGGAGCTGGGCTTTGCCGGGGCCGA
CGAGATCGACGTGGCGCTGCAAAAGCAGAACGCAGGCGGGGGAAGACTCGAAGATACGCTGGTGCAGTCGGGCAAACTGT
CGCCGGAAATGCTGGCGCGCTCCCTGGCCGCGCAGCTTGGCTACGAATTCCTGGATCCGGTTCAGAACCCGCCCGATTCC
AAAGTGGCCCTGATGATTCCTGAAGGCACGGCCCGCCGCTACGGGGTGGTTCCGGTGCGTCTGCAGGGCGAATCGCTGGT
CGTGGCGATGAAAGACCCGCGCAACGTGTTTGCTCTGGACGATCTGAAACTGATCACCGGGCGCGACATCATGCCAGCGG
TCATGGCCGAAAAAGACATCATTCGCCTGATCGAGCGGTATTTCGGCAACAAGGACATGGCCAACCTGAATCAGGAATTG
GCGAACCTGTCCAGCAAGCGCGAGAGCAAGAAGCAAGAAGAGCTGGATCTGTCGGTGGGGCTGGACGACAACGCCGTGGT
GCGCGTGGTGGACAACCTGATCCGCGAGGCCGCCCTGCAGGAAGCCAGCGATATCCACATCGAACCCACCGACTCGGCCC
TGCGAATTCGTTACCGGGTAGACGGCGTGCTGCGCGAGCAAAACGAGCTTCCCAAAGGCAGCGCCCAGAGCATCCTGGCC
CGCATCAAAATCATGGGTAACCTCGATATTTCCGAGCGCCGCGTGCCGCAAGACGGACGGGTGCGTTTCAAAAAGGGCAG
CATCGACATCGACTTGCGCCTTTCGACGCTGCCCACCGTATACGGCGAAAAAGCCGTGATGCGCCTCCTGCAAAAGGCCG
CCAACATTCCTGAAGTGGAAAATTTGGGCTTTTCGGATTACAACTTCCCGCGCTTTCTCGACCTGATCGAAAAGCCTTAC
GGCATCTTTTTGGTGACTGGACCGACGGGTTCGGGCAAATCGTTTACCAGCTTCTCGACCCTGAAGCGCATCGCCCGCCC
CGAAAAGAACACCACCACCATTGAAGACCCGGTGGAATACGAAATTCCGGGAATTATGCAGTCTCAGGTGAATCCGGTGG
CGGGCATGACCTTTGCGCGGGCGCTGCGGGCCTTCCTTCGCCAAGACCCCGACATTATTTTCGTGGGAGAAATCCGGGAC
AGCGAAACCGCTAAAATTGCCGTAGAGGCCGCGCTGACGGGCCATATGGTACTGGCGACCCTCCACACCAACGACGCGCC
CGGAGCCGTCACCCGCCTTGACGAAATGGGCGTGGAAGGCTTCAACATCGGTGCGTCGCTGATTGGCGTGCTGGGGCAAC
GGCTGGTGCGCAAGGTCTGCCCCGATTGCAAAGCGCCCACCAATGCCGACCCCGACGTATTGCGGCGACTGGGCATCTCT
GAGCGGGAACTGCGCGGCGGCGCTCTGGTGCGCGGTGCAGGTTGCCCCCGCTGCGGCGGCACGGGCTACAAGGGCCGAAC
GGGTCTGCACGAATTGATGGTGCTGGACGACGCCCTGCGCACCGCCATCGGCAGCGGCAAACCCGCCGTAGAGCTGCGCG
AAGTAGCCATGAACCAGAGCGGCATGCGAACCATGCGGCAAGACGGCATCGAAAAAGCCCTCAAAGGCCTGACCACGCTG
GAAGAAGTGCTGGCCGTCACGAGCAACTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (513-778)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (43-146)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (367-471)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (198-301)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	76.543	100	0.767
pilF	Thermus thermophilus HB27	54.86	100	0.552