NTDB

Overview

Name	pilA	Type	Machinery gene
Locus tag	MYA84_RS01485	Genome accession	NZ_CP095872
Coordinates	319157..319615 (-)	Length	152 a.a.
NCBI ID	WP_184103424.1	Uniprot ID	-
Organism	Acinetobacter schindleri strain H4-3-C1
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 314157..324615

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MYA84_RS01460 (MYA84_01460)	-	314167..315588 (+)	1422	WP_184103415.1	FAD-dependent oxidoreductase	-
MYA84_RS01465 (MYA84_01465)	-	315775..316365 (+)	591	WP_076754484.1	LemA family protein	-
MYA84_RS01470 (MYA84_01470)	-	316396..317433 (+)	1038	WP_184103418.1	TPM domain-containing protein	-
MYA84_RS01475 (MYA84_01475)	-	317427..317987 (+)	561	WP_184103421.1	TPM domain-containing protein	-
MYA84_RS01480 (MYA84_01480)	-	318031..318960 (-)	930	Protein_277	IS30 family transposase	-
MYA84_RS01485 (MYA84_01485)	pilA	319157..319615 (-)	459	WP_184103424.1	pilin	Machinery gene
MYA84_RS01490 (MYA84_01490)	-	319932..321569 (+)	1638	WP_184103427.1	PglL family O-oligosaccharyltransferase	-
MYA84_RS01495 (MYA84_01495)	bfr	321625..322089 (-)	465	WP_076754470.1	heteropolymeric bacterioferritin subunit Bfr	-
MYA84_RS01500 (MYA84_01500)	-	322331..322525 (-)	195	WP_005223443.1	bacterioferritin-associated ferredoxin	-
MYA84_RS01505 (MYA84_01505)	-	322745..323128 (-)	384	WP_163169092.1	RidA family protein	-
MYA84_RS01510 (MYA84_01510)	-	323261..324322 (+)	1062	WP_184103430.1	RNA-guided endonuclease InsQ/TnpB family protein	-

Sequence

Protein

Download Length: 152 a.a. Molecular weight: 15120.36 Da Isoelectric Point: 6.1386

                                >NTDB_id=678942 MYA84_RS01485 WP_184103424.1 319157..319615(-) (pilA) [Acinetobacter schindleri strain H4-3-C1]

MNAQKGFTLIELMIVVAIIGILAAIAIPAYQTYIAKSQVSAGLAEISAVKTGYEAQVNEGTTITGLGQIGFAATSSTRCS

AYGATAVGNTGAATSAITCTLAGTPAITGGIIALNRVADGTWTCTSSVDTEYLPKGCTKPATAPTAGTIVAL

Nucleotide

Download Length: 459 bp

                                >NTDB_id=678942 MYA84_RS01485 WP_184103424.1 319157..319615(-) (pilA) [Acinetobacter schindleri strain H4-3-C1]

ATGAATGCTCAAAAAGGCTTTACATTGATCGAGCTAATGATTGTGGTCGCTATTATTGGTATTTTGGCTGCAATTGCGAT

TCCTGCTTATCAAACGTACATTGCGAAATCTCAAGTATCAGCAGGTTTAGCAGAAATATCAGCTGTTAAAACTGGGTATG

AAGCTCAAGTTAATGAAGGTACTACGATAACTGGTTTAGGGCAAATTGGTTTCGCAGCGACAAGTAGCACACGCTGTTCT

GCATACGGAGCTACTGCAGTTGGTAATACGGGTGCAGCAACTTCTGCTATTACATGTACATTAGCTGGCACACCAGCTAT

TACAGGCGGCATTATTGCTCTTAACCGTGTTGCCGATGGTACTTGGACATGCACATCAAGCGTGGATACAGAGTATTTAC

CAAAAGGCTGTACGAAGCCTGCTACTGCTCCAACAGCTGGAACAATCGTTGCTCTTTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-138)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA	Acinetobacter baumannii strain A118	61.184	100	0.612
pilA/pilAI	Pseudomonas stutzeri DSM 10701	49.645	92.763	0.461
pilA	Pseudomonas aeruginosa PAK	44.667	98.684	0.441
pilA	Vibrio cholerae C6706	45.89	96.053	0.441
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	45.89	96.053	0.441
pilA	Vibrio cholerae strain A1552	45.89	96.053	0.441
pilA/pilAII	Pseudomonas stutzeri DSM 10701	46.043	91.447	0.421
comP	Acinetobacter baylyi ADP1	43.243	97.368	0.421
pilA	Acinetobacter nosocomialis M2	44.286	92.105	0.408
pilA2	Legionella pneumophila str. Paris	41.958	94.079	0.395
pilA2	Legionella pneumophila strain ERS1305867	41.958	94.079	0.395
pilE	Neisseria gonorrhoeae strain FA1090	34.731	100	0.382
pilA	Haemophilus influenzae Rd KW20	42.647	89.474	0.382
pilE	Neisseria gonorrhoeae MS11	34.356	100	0.368
pilA/pilA1	Eikenella corrodens VA1	35.714	100	0.362

Detailed information NTG0678942