Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | APT55_RS12510 | Genome accession | NZ_AP014642 |
| Coordinates | 2674206..2675315 (+) | Length | 369 a.a. |
| NCBI ID | WP_017288851.1 | Uniprot ID | A0AA96WVU7 |
| Organism | Leptolyngbya boryana dg5 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2669206..2680315
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APT55_RS12500 (LBDG_24930) | grpE | 2671265..2671948 (-) | 684 | WP_017288853.1 | nucleotide exchange factor GrpE | - |
| APT55_RS12505 (LBDG_24940) | pilB/pilB1 | 2672152..2674152 (+) | 2001 | WP_017288852.1 | GspE/PulE family protein | Machinery gene |
| APT55_RS12510 (LBDG_24950) | pilT | 2674206..2675315 (+) | 1110 | WP_017288851.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| APT55_RS12515 (LBDG_24960) | - | 2675427..2676650 (+) | 1224 | WP_017288850.1 | type II secretion system F family protein | - |
| APT55_RS12520 (LBDG_24970) | - | 2676760..2677338 (+) | 579 | WP_026148724.1 | hypothetical protein | - |
| APT55_RS12525 (LBDG_24980) | - | 2677384..2677863 (-) | 480 | WP_017288848.1 | ferredoxin | - |
| APT55_RS12530 (LBDG_24990) | - | 2677864..2678250 (-) | 387 | WP_017288847.1 | DUF1257 domain-containing protein | - |
| APT55_RS12535 (LBDG_25000) | - | 2678293..2678502 (-) | 210 | WP_017288846.1 | DUF2997 domain-containing protein | - |
Sequence
Protein
Download Length: 369 a.a. Molecular weight: 40731.94 Da Isoelectric Point: 6.9125
>NTDB_id=66494 APT55_RS12510 WP_017288851.1 2674206..2675315(+) (pilT) [Leptolyngbya boryana dg5]
MEMMIEDLMEQLIEMGGSDMHLTAGLPPYFRISGHLQPVSDHVLSAEECQRLIFSMLNNTQRKTLEQNWELDCSYGVRGL
ARFRVNVYKDRGTYAACLRALSSKIPNFEKLNLPDVVREMSEKPRGLILVTGPTGSGKTTTLAAMIDLINRTRAEHILTI
EDPIEFVYEPIKSLVHQRQLHEDTKSFANALKAALREDPDIILVGEMRDLETISLAISAAETGHLVFGTLHTSSAAQTVD
RMIDVFPSERQTQVRVQLSNSLVAVFSQTLVPKKNPKPGEYGRVMAQEIMIVTPAIANLIREGKTAQIYSAIQTGGKLGM
QTLEKVLADQYKAGLITFEAAASKTSRPDELQRLIGGVPNGAAGTAVKR
MEMMIEDLMEQLIEMGGSDMHLTAGLPPYFRISGHLQPVSDHVLSAEECQRLIFSMLNNTQRKTLEQNWELDCSYGVRGL
ARFRVNVYKDRGTYAACLRALSSKIPNFEKLNLPDVVREMSEKPRGLILVTGPTGSGKTTTLAAMIDLINRTRAEHILTI
EDPIEFVYEPIKSLVHQRQLHEDTKSFANALKAALREDPDIILVGEMRDLETISLAISAAETGHLVFGTLHTSSAAQTVD
RMIDVFPSERQTQVRVQLSNSLVAVFSQTLVPKKNPKPGEYGRVMAQEIMIVTPAIANLIREGKTAQIYSAIQTGGKLGM
QTLEKVLADQYKAGLITFEAAASKTSRPDELQRLIGGVPNGAAGTAVKR
Nucleotide
Download Length: 1110 bp
>NTDB_id=66494 APT55_RS12510 WP_017288851.1 2674206..2675315(+) (pilT) [Leptolyngbya boryana dg5]
ATGGAAATGATGATCGAAGACTTGATGGAACAACTCATCGAAATGGGCGGTTCTGACATGCACCTGACCGCAGGACTGCC
GCCTTATTTTCGCATCAGCGGACATCTTCAACCCGTCAGCGATCATGTTCTCAGTGCAGAAGAATGTCAGCGTTTGATTT
TCAGTATGCTGAATAACACTCAGCGCAAAACACTAGAGCAAAACTGGGAGCTTGACTGCTCTTATGGTGTGCGCGGATTA
GCTCGTTTTCGGGTCAATGTCTACAAAGATCGCGGAACTTACGCTGCATGTCTACGGGCACTCAGTTCCAAAATTCCAAA
TTTTGAAAAACTGAATCTTCCCGATGTCGTTCGAGAAATGTCCGAAAAGCCAAGAGGCTTAATCCTAGTTACAGGTCCTA
CCGGTTCAGGTAAGACAACGACTTTAGCTGCAATGATTGATTTGATCAACCGCACTCGTGCAGAACATATTTTGACGATC
GAAGATCCGATCGAATTTGTATACGAACCTATCAAAAGTTTGGTTCACCAACGCCAGCTTCATGAAGATACAAAGAGCTT
TGCAAATGCTCTAAAAGCAGCTCTCCGGGAAGATCCAGATATTATTCTGGTTGGGGAAATGCGGGACTTGGAAACTATCT
CACTAGCAATTTCTGCGGCAGAAACAGGTCACTTAGTTTTCGGCACGCTCCATACGAGTTCTGCGGCACAAACCGTTGAC
CGGATGATTGATGTCTTTCCATCCGAGCGTCAAACGCAAGTGCGGGTGCAGCTTTCCAACTCACTCGTTGCAGTCTTCAG
CCAAACGCTGGTGCCGAAGAAGAATCCCAAACCGGGTGAATATGGGCGAGTCATGGCTCAGGAAATTATGATTGTCACCC
CTGCGATCGCCAACCTGATTCGTGAAGGGAAAACCGCCCAAATTTACTCAGCAATTCAGACAGGCGGAAAATTGGGAATG
CAAACCCTTGAAAAAGTGCTAGCTGATCAATACAAAGCTGGACTGATTACATTTGAAGCCGCCGCCTCCAAAACTTCTCG
TCCTGATGAACTTCAGCGCTTAATTGGTGGAGTTCCGAATGGTGCAGCAGGCACAGCAGTGAAGCGCTAA
ATGGAAATGATGATCGAAGACTTGATGGAACAACTCATCGAAATGGGCGGTTCTGACATGCACCTGACCGCAGGACTGCC
GCCTTATTTTCGCATCAGCGGACATCTTCAACCCGTCAGCGATCATGTTCTCAGTGCAGAAGAATGTCAGCGTTTGATTT
TCAGTATGCTGAATAACACTCAGCGCAAAACACTAGAGCAAAACTGGGAGCTTGACTGCTCTTATGGTGTGCGCGGATTA
GCTCGTTTTCGGGTCAATGTCTACAAAGATCGCGGAACTTACGCTGCATGTCTACGGGCACTCAGTTCCAAAATTCCAAA
TTTTGAAAAACTGAATCTTCCCGATGTCGTTCGAGAAATGTCCGAAAAGCCAAGAGGCTTAATCCTAGTTACAGGTCCTA
CCGGTTCAGGTAAGACAACGACTTTAGCTGCAATGATTGATTTGATCAACCGCACTCGTGCAGAACATATTTTGACGATC
GAAGATCCGATCGAATTTGTATACGAACCTATCAAAAGTTTGGTTCACCAACGCCAGCTTCATGAAGATACAAAGAGCTT
TGCAAATGCTCTAAAAGCAGCTCTCCGGGAAGATCCAGATATTATTCTGGTTGGGGAAATGCGGGACTTGGAAACTATCT
CACTAGCAATTTCTGCGGCAGAAACAGGTCACTTAGTTTTCGGCACGCTCCATACGAGTTCTGCGGCACAAACCGTTGAC
CGGATGATTGATGTCTTTCCATCCGAGCGTCAAACGCAAGTGCGGGTGCAGCTTTCCAACTCACTCGTTGCAGTCTTCAG
CCAAACGCTGGTGCCGAAGAAGAATCCCAAACCGGGTGAATATGGGCGAGTCATGGCTCAGGAAATTATGATTGTCACCC
CTGCGATCGCCAACCTGATTCGTGAAGGGAAAACCGCCCAAATTTACTCAGCAATTCAGACAGGCGGAAAATTGGGAATG
CAAACCCTTGAAAAAGTGCTAGCTGATCAATACAAAGCTGGACTGATTACATTTGAAGCCGCCGCCTCCAAAACTTCTCG
TCCTGATGAACTTCAGCGCTTAATTGGTGGAGTTCCGAATGGTGCAGCAGGCACAGCAGTGAAGCGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
54.441 |
94.58 |
0.515 |
| pilT | Pseudomonas stutzeri DSM 10701 |
53.582 |
94.58 |
0.507 |
| pilT | Acinetobacter baylyi ADP1 |
52.149 |
94.58 |
0.493 |
| pilT | Legionella pneumophila strain ERS1305867 |
52.161 |
94.038 |
0.491 |
| pilT | Legionella pneumophila strain Lp02 |
52.161 |
94.038 |
0.491 |
| pilT | Acinetobacter nosocomialis M2 |
51.576 |
94.58 |
0.488 |
| pilT | Acinetobacter baumannii D1279779 |
51.576 |
94.58 |
0.488 |
| pilT | Acinetobacter baumannii strain A118 |
51.576 |
94.58 |
0.488 |
| pilT | Neisseria gonorrhoeae MS11 |
51.622 |
91.87 |
0.474 |
| pilT | Neisseria meningitidis 8013 |
51.327 |
91.87 |
0.472 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
47.383 |
98.374 |
0.466 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.415 |
92.683 |
0.458 |
| pilT | Vibrio cholerae strain A1552 |
49.415 |
92.683 |
0.458 |
| pilU | Pseudomonas stutzeri DSM 10701 |
39.295 |
100 |
0.393 |