Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG585_RS14530 Genome accession   NZ_CP108365
Coordinates   3184047..3185975 (+) Length   642 a.a.
NCBI ID   WP_266650853.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01340     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3179047..3190975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG585_RS14515 (OG585_14525) - 3180121..3180426 (+) 306 WP_054233549.1 hypothetical protein -
  OG585_RS14520 (OG585_14530) - 3180644..3182107 (+) 1464 WP_266624590.1 FGGY family carbohydrate kinase -
  OG585_RS14525 (OG585_14535) rcrP 3182314..3184047 (+) 1734 WP_266624591.1 ABC transporter ATP-binding protein Regulator
  OG585_RS14530 (OG585_14540) rcrQ 3184047..3185975 (+) 1929 WP_266650853.1 ABC transporter ATP-binding protein Regulator
  OG585_RS14535 (OG585_14545) - 3186244..3187554 (-) 1311 WP_266624593.1 RNA polymerase sigma factor -
  OG585_RS14540 (OG585_14550) dnaG 3187755..3189662 (-) 1908 WP_266624594.1 DNA primase -
  OG585_RS14545 (OG585_14555) - 3189706..3190971 (-) 1266 WP_266650851.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69500.17 Da        Isoelectric Point: 6.2673

>NTDB_id=659514 OG585_RS14530 WP_266650853.1 3184047..3185975(+) (rcrQ) [Streptomyces sp. NBC_01340]
MAGPMGRMMAGGGPDQRSMDFKVSGKRLLAQFKPERATMYGMLVAVVLSVGLSVVGPKILGRATDLVFAGIIGRQMPAGA
TKAEVLAGMRRRGEGGMADMLAGTDFTPGKGIDFDAVGNVLLLALCTFLLAGLLMAVATRLVNRAVNKTVYHMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIQQTLQQSMGQLVNSLLTIIGVLTVMFWVSWLLALVALVTVPLSFVVATRIGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHTLVKVFGRQEESAAQFAEQNEKLYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQQADPVPAARPDELRGRVALE
NVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVTGGRITLDGVDIASMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFIRTLPEGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHAELLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=659514 OG585_RS14530 WP_266650853.1 3184047..3185975(+) (rcrQ) [Streptomyces sp. NBC_01340]
ATGGCCGGGCCCATGGGACGCATGATGGCCGGGGGCGGCCCCGATCAGCGCTCAATGGATTTCAAGGTGTCCGGGAAGAG
GCTCCTGGCCCAGTTCAAACCCGAACGCGCCACGATGTACGGAATGCTGGTCGCCGTCGTCCTGAGCGTGGGGCTCTCGG
TGGTCGGGCCGAAGATCCTCGGCAGGGCGACCGACCTGGTCTTCGCGGGCATCATCGGGCGGCAGATGCCGGCCGGCGCC
ACCAAGGCCGAGGTCCTCGCGGGTATGCGGCGGCGCGGCGAGGGTGGCATGGCCGACATGCTCGCCGGCACGGACTTCAC
CCCCGGCAAGGGCATCGACTTCGACGCCGTCGGCAACGTACTGCTGCTCGCGCTCTGTACGTTCCTGCTGGCCGGTCTGC
TGATGGCGGTGGCGACGCGCCTGGTGAACCGGGCCGTCAACAAGACCGTCTACCACATGCGTGAGGACCTGCAGGCGAAG
CTCTCCCGGCTGCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGTGAGGTGCTCAGCCGTGCCACGAACGACATCGACAA
CATCCAGCAGACCCTGCAGCAGTCGATGGGCCAGCTGGTGAACTCCCTGCTGACCATCATCGGTGTGCTCACGGTGATGT
TCTGGGTGTCGTGGCTGCTCGCGCTGGTCGCGCTCGTCACGGTCCCGCTGTCCTTCGTCGTCGCCACCCGCATCGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCA
CACGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGGCTCAGTTCGCCGAGCAGAACGAGAAGTTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGGTGGCG
GTGGTCGGCGGACTGCGTGTCGCGTCCGGCTCACTGTCGATCGGCGACGTCCAGGCCTTCATCCAGTACTCCCGCCAGTT
CTCGATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTCGTGCAGTCCGGTGTCGCGTCGGCGGAGCGGATATTCGAAC
TCCTCGACGCGGAGGAGCAGCAGGCCGACCCGGTGCCGGCGGCGCGCCCCGACGAGCTGCGCGGGCGGGTGGCGCTGGAG
AACGTGTCCTTCCGCTACGACCCCGAGAAGCCGCTCATCGAGGACCTGTCCCTGAAGGTCGAGCCGGGCCACACGGTGGC
GATCGTCGGCCCGACCGGCGCCGGCAAGACCACGCTGGTGAACCTTCTGATGCGCTTCTACGACGTCACCGGCGGCCGGA
TCACCCTCGACGGCGTCGACATCGCGTCCATGTCCCGGGACGAACTCCGGGCCGGGATCGGGATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGGGCCTCGCGTGAGGTCACGCGCGGGGAGATCGAGGAGGC
GGCGCGGGCCGCGCACGCGGACCGTTTCATCCGTACGCTCCCCGAGGGCTACGACACCGTCATCGACGACGAGGGGACGG
GGGTCAGCGCGGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTTGTCCTCGACGAG
GCGACCAGTTCCGTCGACACCCGTACGGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTCGCGCACGGGCGGACGTCGTT
CGTGATCGCCCACCGGCTCTCCACGATCCGGGACGCGGACACCATCCTGGTGATGGAGAACGGGTCGATCGTCGAGCAGG
GCGCGCATGCGGAGCTGTTGGCGGCGGACGGTGCGTACGCGCGCCTCTACAAGGCCCAGTTCGCCCAGGCGGTGGCGGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(42-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.291

96.262

0.388