Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG429_RS13765 Genome accession   NZ_CP108131
Coordinates   2821227..2823149 (+) Length   640 a.a.
NCBI ID   WP_328925616.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00190     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2816227..2828149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG429_RS13750 (OG429_13785) - 2817502..2817801 (+) 300 WP_328925613.1 YtxH domain-containing protein -
  OG429_RS13755 (OG429_13790) - 2817851..2819299 (+) 1449 WP_328925614.1 FGGY family carbohydrate kinase -
  OG429_RS13760 (OG429_13795) rcrP 2819497..2821230 (+) 1734 WP_328925615.1 ABC transporter ATP-binding protein Regulator
  OG429_RS13765 (OG429_13800) rcrQ 2821227..2823149 (+) 1923 WP_328925616.1 ABC transporter ATP-binding protein Regulator
  OG429_RS13770 (OG429_13805) rpoS 2823254..2824384 (-) 1131 WP_328925617.1 RNA polymerase sigma factor Regulator
  OG429_RS13775 (OG429_13810) - 2824525..2826612 (-) 2088 WP_328925618.1 molybdopterin oxidoreductase family protein -
  OG429_RS13780 (OG429_13815) - 2826798..2827568 (-) 771 WP_328925619.1 glucose 1-dehydrogenase -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68666.19 Da        Isoelectric Point: 5.1886

>NTDB_id=654647 OG429_RS13765 WP_328925616.1 2821227..2823149(+) (rcrQ) [Streptomyces sp. NBC_00190]
MSGPGGRMMAGPAQRSMDFKGSGKRLLRQLAQDRVKLWGMVAAVVGSVGCAVVGPKILGQATDLVFAGIVGRQMPAGLTK
QQALDGLRDRGQGGMADMLSGTDFTPGKGIDFGAVGVVALWALVVFVLAGLLMLVATRLSNHVMNGTVYRMREELQAKLS
RLPLSYFDQQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLVMMFWISPLLALVALGTVPVSVFVAAKIGKKS
QPQFVAQWKSTGALNAHIEEMYSGHTLVKVFGRQKESAAVFAEQNEALYRASFKAQLVSGIMQPVMLFISNINYVLIAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGIASAERVYELLDAEEQEPDAEVPECPEELRGQVTLDKV
AFRYEPDKPLIENLSLSVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRGGIGMVLQDTWL
FGGTIADNIAYGASREVTRAEIEEAARAAHADRFIRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLASGGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=654647 OG429_RS13765 WP_328925616.1 2821227..2823149(+) (rcrQ) [Streptomyces sp. NBC_00190]
ATGAGCGGGCCCGGAGGACGGATGATGGCGGGGCCGGCCCAGCGGTCCATGGATTTCAAGGGTTCGGGGAAGCGGCTGCT
GCGTCAGCTCGCACAGGACCGGGTCAAGCTGTGGGGCATGGTCGCGGCCGTCGTCGGCAGCGTCGGCTGCGCGGTCGTCG
GTCCGAAGATCCTCGGCCAGGCCACCGACCTGGTCTTCGCGGGGATCGTCGGCCGGCAGATGCCGGCCGGGCTCACCAAG
CAGCAGGCGCTGGACGGGCTGCGCGACAGGGGCCAGGGCGGCATGGCGGACATGCTGTCCGGCACCGACTTCACCCCGGG
CAAGGGCATCGACTTCGGTGCCGTCGGGGTCGTCGCCCTCTGGGCGCTGGTGGTCTTCGTCCTCGCGGGCCTGCTCATGC
TGGTCGCCACGAGGCTGTCGAACCACGTGATGAACGGCACCGTCTACCGGATGCGCGAGGAGCTCCAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCAGCAGAAGCGAGGTGAGGTGCTCAGCCGGGCCACCAACGACATAGACAACATCGG
CCAGACGCTGCAGCAGACGATGGGCCAGTTGCTGAACTCGCTGCTGACCATCGTCGGCGTGCTGGTGATGATGTTCTGGA
TCTCGCCGCTGCTGGCGCTGGTCGCGCTGGGGACCGTACCGGTCTCCGTCTTCGTCGCGGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAATCGACCGGTGCGCTGAACGCCCACATCGAGGAGATGTACTCGGGCCACACGCT
GGTCAAGGTCTTCGGCCGGCAGAAGGAGTCCGCGGCCGTCTTCGCCGAGCAGAACGAGGCGCTGTACCGGGCCTCCTTCA
AGGCGCAGCTGGTCAGCGGCATCATGCAGCCGGTGATGCTGTTCATCTCGAACATCAACTACGTGCTGATAGCCGTCGTC
GGCGGGCTCCGGGTCGCCTCGGGCACCCTGTCGATCGGTGATGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCGAT
GCCGCTGACCCAGGTCGCCTCGATGGCGAACCTCGTGCAGTCCGGTATCGCCTCGGCGGAGCGGGTCTACGAGCTGCTCG
ACGCGGAGGAGCAGGAGCCGGACGCCGAGGTTCCGGAGTGCCCGGAGGAGCTGCGCGGCCAGGTCACGCTCGACAAGGTG
GCCTTCCGCTACGAGCCGGACAAGCCGCTGATCGAGAACCTCTCGCTGTCGGTCGAGCCGGGCCAGACGGTCGCGATCGT
CGGCCCGACGGGCGCCGGCAAGACGACGCTCGTCAACCTGCTGATGCGGTTCTACGAGGTCACGGGCGGCGAGATCGCCC
TGGACGGCGTGGACATCGCGAAGATGACGCGCGAGGAGCTGCGCGGCGGCATCGGCATGGTGCTGCAGGACACCTGGCTG
TTCGGCGGCACCATCGCGGACAACATCGCCTACGGCGCCTCGCGCGAGGTCACGCGCGCCGAGATCGAGGAGGCGGCGCG
TGCGGCCCACGCGGACCGCTTCATCCGCACCCTCCCGGACGGCTACGACACCGTGCTGGACGACGAGGGCGCGGGCGTCA
GCGCCGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCGACG
AGCTCGGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTGGCGCACGGCCGTACGTCGTTCGTGAT
CGCGCACCGGCTGTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGAGCGGCTCGATCGTGGAGCAGGGCACGC
ACGAGGAGCTGCTGGCATCCGGCGGCGCCTACGCGCGGCTGTACGCGGCGCAGTTCGCCCAGGCGGTCGCCGAGGTCGAC
TAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(55-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.032

97.188

0.389