Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG429_RS13770 Genome accession   NZ_CP108131
Coordinates   2823254..2824384 (-) Length   376 a.a.
NCBI ID   WP_328925617.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00190     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2818254..2829384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG429_RS13760 (OG429_13795) rcrP 2819497..2821230 (+) 1734 WP_328925615.1 ABC transporter ATP-binding protein Regulator
  OG429_RS13765 (OG429_13800) rcrQ 2821227..2823149 (+) 1923 WP_328925616.1 ABC transporter ATP-binding protein Regulator
  OG429_RS13770 (OG429_13805) rpoS 2823254..2824384 (-) 1131 WP_328925617.1 RNA polymerase sigma factor Regulator
  OG429_RS13775 (OG429_13810) - 2824525..2826612 (-) 2088 WP_328925618.1 molybdopterin oxidoreductase family protein -
  OG429_RS13780 (OG429_13815) - 2826798..2827568 (-) 771 WP_328925619.1 glucose 1-dehydrogenase -
  OG429_RS13785 (OG429_13820) - 2827636..2828250 (-) 615 WP_328930263.1 ElyC/SanA/YdcF family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41999.03 Da        Isoelectric Point: 5.0014

>NTDB_id=654648 OG429_RS13770 WP_328925617.1 2823254..2824384(-) (rpoS) [Streptomyces sp. NBC_00190]
MSYPTLKCGAPVLGALEVAPVQTRILTVTVNVSESSEPAEAEAVDEEHEEPEVLELIEPVPPQRKRTSADGGAGPSADLF
RQYLREIGRIPLLTAAEEVDLARRVEAGLFAEEKLGSTPDLDSQLALDLDKLVVMGRMAKRRLIESNLRLVVSVAKRYVG
RGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGY
EPTAEEVAAHLELTPERVLEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFFLLREHLEAVLSTLGERER
KVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLSKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=654648 OG429_RS13770 WP_328925617.1 2823254..2824384(-) (rpoS) [Streptomyces sp. NBC_00190]
GTGTCGTACCCCACACTGAAGTGCGGTGCCCCCGTCCTCGGAGCCCTGGAGGTCGCCCCCGTGCAGACCCGGATCCTGAC
CGTGACCGTGAACGTGAGCGAGTCCTCGGAACCCGCAGAGGCCGAAGCCGTGGACGAAGAGCACGAAGAGCCCGAGGTAC
TTGAGCTGATCGAGCCGGTGCCCCCGCAGCGCAAACGGACCTCGGCGGACGGTGGGGCGGGCCCGTCCGCCGATCTGTTC
CGGCAGTACCTGCGCGAGATAGGCAGGATCCCGCTGCTGACCGCAGCCGAGGAGGTGGACCTCGCGCGGCGCGTCGAAGC
CGGACTGTTCGCCGAGGAGAAACTGGGCAGCACCCCGGACCTCGACTCCCAGCTCGCCCTGGACCTCGACAAACTCGTCG
TCATGGGGCGCATGGCCAAACGCCGGCTGATCGAGTCGAACCTGCGGCTCGTCGTCTCCGTCGCGAAGCGGTACGTGGGA
CGCGGGCTCACCATGCTCGACCTCGTGCAGGAGGGGAACCTCGGGCTCATCCGGGCCGTCGAGAAGTTCGACTACGCCCG
CGGGTACAAGTTCTCCACCTACGCCACCTGGTGGATCCGGCAGGCGATGTCCCGGGCCCTCGCCGACCAGGCCCGGACCA
TCCGGGTGCCCGTCCACGTCGTGGAGCTGATCAACCGCGTCGTGCGCGTACAGCGCCGCATGCTCCAGGAGCGCGGGTAC
GAGCCCACCGCCGAGGAGGTCGCCGCCCACCTGGAGCTGACCCCGGAGCGGGTCCTGGAGGTGCTCCGCCTCGCCCAGGA
ACCGGTCTCGCTGCACGCCCCGGTCGGTGAGGAGGACGACGTCGCGCTCGGGGACCTCATCGAGGACGGCGACGCCGCCT
CGCCCGTGGAGTCCGCCGCGTTCTTCCTGCTGCGCGAGCACCTGGAAGCCGTGCTGTCGACCCTCGGCGAGCGCGAGCGG
AAGGTCGTCCAGCTACGGTACGGGCTCGCCGACGGGCGCCCGCGCACCCTGGAGGAGATCGGCCGGATCTTCGGCGTGAC
GCGCGAGCGGATCCGCCAGATCGAGTCCAAGACCCTCAGCAAACTGCGCGACCACGCCTTCGCCGACCAGCTCCGCGGCT
ACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(78-111)

Sigma-70 region 2 (Sigma70_r2)

(143-212)

Sigma-70, region 4 (Sigma70_r4)

(311-363)

Sigma-70 region 3 (Sigma70_r3)

(222-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.816

91.223

0.372