Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAII   Type   Regulator
Locus tag   L1776_RS17510 Genome accession   NZ_CP091174
Coordinates   3742308..3742733 (+) Length   141 a.a.
NCBI ID   WP_236450817.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain XX1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3737308..3747733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1776_RS17490 pilD 3737716..3738582 (-) 867 WP_236450814.1 prepilin peptidase Machinery gene
  L1776_RS17495 pilC 3738587..3739804 (-) 1218 WP_236450815.1 type II secretion system F family protein Machinery gene
  L1776_RS17500 pilB 3739807..3741510 (-) 1704 WP_106442874.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L1776_RS17505 pilA/pilAI 3741842..3742249 (+) 408 WP_419586397.1 pilin Machinery gene
  L1776_RS17510 pilA/pilAII 3742308..3742733 (+) 426 WP_236450817.1 pilin Regulator
  L1776_RS17515 - 3742758..3744149 (+) 1392 WP_236450818.1 O-antigen ligase family protein -
  L1776_RS17520 tfpZ 3744158..3744895 (+) 738 WP_236450819.1 TfpX/TfpZ family type IV pilin accessory protein -
  L1776_RS17525 cysN 3745018..3746916 (-) 1899 WP_236450820.1 sulfate adenylyltransferase subunit CysN -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 14819.23 Da        Isoelectric Point: 9.1838

>NTDB_id=648168 L1776_RS17510 WP_236450817.1 3742308..3742733(+) (pilA/pilAII) [Stutzerimonas stutzeri strain XX1]
MTPVKKSYLGFSLIELMIVLSIIGILAAIAFPAYQNYTVRSTAAAALAEISPGKTAFEHAINENRTPSLVPGLPGFIGIG
ASTNYCTVTLIATATGSITCTARNGMPGRFNGKTITLNRTAEGLWGCTSDLDSKYKPGKCL

Nucleotide


Download         Length: 426 bp        

>NTDB_id=648168 L1776_RS17510 WP_236450817.1 3742308..3742733(+) (pilA/pilAII) [Stutzerimonas stutzeri strain XX1]
ATGACGCCTGTGAAAAAGTCGTACCTCGGCTTTTCTCTGATTGAGTTGATGATCGTGCTATCAATCATCGGCATTCTTGC
GGCCATTGCTTTTCCTGCCTATCAGAACTACACCGTGCGCTCGACAGCCGCTGCCGCCTTGGCCGAAATCAGTCCGGGAA
AAACCGCGTTCGAGCACGCCATCAACGAGAATCGCACCCCCTCACTGGTGCCCGGATTGCCGGGATTTATCGGTATCGGC
GCGAGCACAAACTATTGCACCGTGACGCTTATAGCAACGGCGACGGGCTCGATCACCTGTACCGCACGAAACGGAATGCC
GGGACGGTTTAACGGCAAAACCATTACCCTTAACCGCACGGCGGAGGGCTTGTGGGGCTGCACCAGTGATCTGGACAGCA
AGTACAAGCCCGGCAAATGCCTCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-31)

Pilin (bacterial filament) (Pilin)

(39-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAII Pseudomonas stutzeri DSM 10701

81.56

100

0.816
  pilA/pilAI Pseudomonas stutzeri DSM 10701

68.702

92.908

0.638
  pilA Pseudomonas aeruginosa PAK

46.053

100

0.496
  comP Acinetobacter baylyi ADP1

41.781

100

0.433
  pilA Acinetobacter baumannii strain A118

41.912

96.454

0.404
  pilA2 Legionella pneumophila strain ERS1305867

40.146

97.163

0.39
  pilA Ralstonia pseudosolanacearum GMI1000

32.738

100

0.39
  pilA2 Legionella pneumophila str. Paris

40.602

94.326

0.383
  pilA Vibrio cholerae strain A1552

37.143

99.291

0.369
  pilA Vibrio cholerae C6706

37.143

99.291

0.369
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

37.143

99.291

0.369