Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG803_RS09395 Genome accession   NZ_CP107894
Coordinates   2069699..2070922 (-) Length   407 a.a.
NCBI ID   WP_313943853.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00467     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2064699..2075922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG803_RS09375 (OG803_09380) - 2064991..2065329 (-) 339 WP_313943849.1 P-II family nitrogen regulator -
  OG803_RS09380 (OG803_09385) - 2065326..2066681 (-) 1356 WP_327679774.1 ammonium transporter -
  OG803_RS09385 (OG803_09390) - 2067021..2068493 (-) 1473 WP_327679775.1 hypothetical protein -
  OG803_RS09390 (OG803_09395) - 2068921..2069574 (+) 654 WP_327679777.1 bifunctional DNA primase/polymerase -
  OG803_RS09395 (OG803_09400) pilA 2069699..2070922 (-) 1224 WP_313943853.1 signal recognition particle-docking protein FtsY Machinery gene
  OG803_RS09400 (OG803_09405) - 2071097..2072557 (+) 1461 WP_327679779.1 cytosine permease -
  OG803_RS09405 (OG803_09410) - 2072692..2073666 (+) 975 WP_313943855.1 LLM class flavin-dependent oxidoreductase -
  OG803_RS09410 (OG803_09415) - 2073744..2075162 (-) 1419 WP_327679781.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 42788.84 Da        Isoelectric Point: 4.4165

>NTDB_id=648166 OG803_RS09395 WP_313943853.1 2069699..2070922(-) (pilA) [Streptomyces sp. NBC_00467]
MEIVILAVVIALVALGAISGLVVSSRKKKQLPPSAPSSTPTITAPPAEPHVGDEAETPRDEPRRTIEEVDLPSAEEAADT
PVAVEDPVVAEPPAPAIEIPEPTAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEETWEEIEDTLLTADVGVAPTQELV
ERLRERVRVLGTRTPDDLRNLLREELLALIGTDVDRAVKTESGLDTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVL
GAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK
HGPLDEILLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGADDLAPFEPEAF
VDALIGE

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=648166 OG803_RS09395 WP_313943853.1 2069699..2070922(-) (pilA) [Streptomyces sp. NBC_00467]
ATGGAAATCGTCATCCTTGCCGTAGTCATCGCCCTGGTCGCTCTCGGCGCGATCAGCGGTCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCGCCCTCGGCGCCGTCGAGCACGCCGACCATCACCGCTCCGCCCGCCGAGCCGCATGTCGGCGACG
AGGCGGAGACACCGCGGGACGAGCCACGCCGGACCATCGAGGAGGTCGACCTCCCGTCGGCCGAGGAGGCCGCCGACACG
CCGGTCGCCGTCGAGGACCCGGTCGTCGCCGAGCCCCCCGCCCCCGCGATCGAGATCCCGGAGCCCACCGCCGGCCGGCT
CGTCCGGCTGCGCGCCCGCCTCGCCCGCTCGCAGAACTCGCTCGGCAAGGGGCTGCTCACGCTCCTGTCCCGCGAGCACC
TCGACGAGGAGACATGGGAGGAGATCGAGGACACGCTGCTCACCGCCGACGTCGGTGTGGCGCCGACCCAGGAACTCGTC
GAGCGGCTGCGCGAGCGGGTCAGGGTGCTCGGCACGCGTACGCCGGACGATCTGCGCAACCTGCTCCGCGAGGAGCTGCT
GGCGCTCATCGGCACCGACGTCGACCGTGCGGTTAAGACCGAGAGCGGTCTGGACACCCCGGGCGTCGTCATGGTCGTCG
GTGTCAACGGCACCGGTAAGACCACCACCACCGGCAAGCTCGCCCGGGTGCTCGTCGCCGACGGCCGCTCGGTCGTCCTC
GGCGCCGCGGACACCTTCCGTGCGGCGGCGGCCGATCAGCTCCAGACGTGGGGCGAGCGCGTCGGCGCCCGCACCGTGCG
CGGACCCGAGGGCGGCGACCCGGCCTCGATCGCGTTCGACGCCGTGAAGGAAGGCATCGCCGAGGGCGCCGACGTGGTGC
TCATCGACACGGCGGGCCGGCTGCACACCAAGACCGGCCTGATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTCGAGAAG
CACGGCCCGCTGGACGAGATCCTGCTGGTCCTCGACGCCACGACCGGTCAGAACGGTCTCGTGCAGGCGCGGGTGTTCGC
GGAGGTCGTGGACATCACCGGCATCGTGCTGACCAAGCTCGACGGTACCGCCAAGGGCGGCATCGTCATCGCGGTCCAGC
GTGAGCTGGGCGTACCGGTGAAGCTGGTGGGTCTGGGCGAGGGCGCCGACGACCTGGCGCCCTTCGAGCCGGAGGCGTTC
GTCGACGCGCTCATCGGGGAGTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(208-405)

SRP54-type protein, helical bundle domain (SRP54_N)

(121-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

39.225

100

0.398