Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L1776_RS17495 Genome accession   NZ_CP091174
Coordinates   3738587..3739804 (-) Length   405 a.a.
NCBI ID   WP_236450815.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain XX1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3733587..3744804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1776_RS17460 rpsI 3733735..3734127 (-) 393 WP_013981948.1 30S ribosomal protein S9 -
  L1776_RS17465 rplM 3734143..3734571 (-) 429 WP_003287302.1 50S ribosomal protein L13 -
  L1776_RS17470 - 3734992..3736032 (+) 1041 WP_236450813.1 NADP(H)-dependent aldo-keto reductase -
  L1776_RS17475 - 3736089..3736769 (+) 681 WP_013981946.1 energy-coupling factor ABC transporter permease -
  L1776_RS17480 yacG 3736782..3736979 (-) 198 WP_041771656.1 DNA gyrase inhibitor YacG -
  L1776_RS17485 coaE 3736976..3737584 (-) 609 WP_080940987.1 dephospho-CoA kinase -
  L1776_RS17490 pilD 3737716..3738582 (-) 867 WP_236450814.1 prepilin peptidase Machinery gene
  L1776_RS17495 pilC 3738587..3739804 (-) 1218 WP_236450815.1 type II secretion system F family protein Machinery gene
  L1776_RS17500 pilB 3739807..3741510 (-) 1704 WP_106442874.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L1776_RS17505 pilA/pilAI 3741842..3742249 (+) 408 WP_419586397.1 pilin Machinery gene
  L1776_RS17510 pilA/pilAII 3742308..3742733 (+) 426 WP_236450817.1 pilin Regulator
  L1776_RS17515 - 3742758..3744149 (+) 1392 WP_236450818.1 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44120.85 Da        Isoelectric Point: 9.8747

>NTDB_id=648165 L1776_RS17495 WP_236450815.1 3738587..3739804(-) (pilC) [Stutzerimonas stutzeri strain XX1]
MAQKAIRTSVFSWEGTDRKGSKVKGELSGASPALVKAQLRKQGINPQKVRKKSVSLFGAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKPQYFDDLYCNLVDSGEQSGALETLLDRVATYKEKT
EALKAKIKKAMNYPIAVVLVAVIVSAILLIKVVPQFQEVFANFGAELPAFTLMVIGLSEALQEWWFIVLVGLIAGAFAFK
EAHKRSEKFRNWFDRLLLKVPVVGDILYKSSVARFARTLSTTFAAGVPLVDALDSVAGATGNVVFRAATMKVKNDVSTGM
QLNFSMRTTGAFPTMAVQMTAIGEESGSLDEMLAKVATFYEDEVDNMVDSLTSLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=648165 L1776_RS17495 WP_236450815.1 3738587..3739804(-) (pilC) [Stutzerimonas stutzeri strain XX1]
ATGGCGCAGAAAGCGATCAGAACCAGTGTGTTCAGCTGGGAGGGAACCGACCGCAAGGGCAGCAAGGTCAAGGGTGAGCT
TAGTGGTGCGAGCCCGGCGCTGGTGAAGGCGCAATTGCGCAAGCAGGGGATCAATCCACAGAAAGTGCGCAAGAAGTCCG
TGTCTCTGTTTGGAGCGGGCAAGAAAATTAAACCCATGGATATCGCGTTGTTCACCCGACAGATGGCGACGATGATGAAA
GCCGGTGTGCCGCTGCTGCAATCCTTCGATATCATCGGTGAGGGTTTCGACAATCCGAACATGCGCAAGCTGGTGGATGA
CCTGAAGCAGGAGGTTGCGGCAGGTAACAGTTTCGCGACGGCTTTGCGCAAGAAGCCACAATACTTCGATGACCTGTATT
GCAACTTGGTCGATTCCGGTGAGCAATCCGGTGCCTTGGAAACCTTGCTCGATCGCGTGGCGACCTACAAGGAAAAGACT
GAAGCATTGAAGGCCAAGATCAAGAAGGCGATGAACTATCCCATTGCGGTAGTGTTGGTGGCGGTCATTGTGTCGGCCAT
TCTGTTGATCAAGGTGGTGCCACAGTTCCAAGAGGTGTTTGCCAACTTCGGGGCCGAGCTTCCGGCTTTTACCTTGATGG
TAATTGGGTTGTCGGAAGCGCTCCAGGAGTGGTGGTTCATTGTTCTGGTGGGGCTGATTGCGGGAGCTTTTGCTTTCAAG
GAGGCGCACAAGCGCTCCGAGAAATTTCGCAACTGGTTCGATCGTTTGCTGCTGAAGGTACCGGTTGTTGGTGACATTCT
TTACAAGTCATCGGTCGCCCGCTTCGCTCGCACTCTATCGACGACTTTCGCTGCGGGCGTGCCACTTGTGGATGCGCTGG
ATTCGGTGGCGGGGGCTACGGGCAACGTAGTCTTTCGAGCTGCGACTATGAAAGTCAAGAATGATGTATCCACCGGCATG
CAACTTAATTTCTCCATGCGTACTACGGGTGCCTTCCCAACCATGGCGGTTCAAATGACGGCGATCGGCGAAGAGTCTGG
TTCGCTTGATGAGATGCTCGCCAAGGTTGCGACTTTCTACGAGGATGAAGTCGATAACATGGTAGATAGCCTGACTAGCC
TGATGGAGCCGATGATCATGGCTGTACTCGGGGTTCTGGTGGGCGGCTTGATCATCGCTATGTACCTTCCGATATTCCAG
CTCGGCTCTGTAGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

90.37

100

0.904
  pilC Acinetobacter baylyi ADP1

60.591

100

0.607
  pilC Acinetobacter baumannii D1279779

60.494

100

0.605
  pilC Legionella pneumophila strain ERS1305867

53.03

97.778

0.519
  pilG Neisseria gonorrhoeae MS11

44.949

97.778

0.44
  pilG Neisseria meningitidis 44/76-A

44.949

97.778

0.44
  pilC Vibrio cholerae strain A1552

43.939

97.778

0.43
  pilC Vibrio campbellii strain DS40M4

41.162

97.778

0.402
  pilC Thermus thermophilus HB27

36.842

98.519

0.363