Detailed information NTG0648164

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L1776_RS17490
• Genome accession: NZ_CP091174
• Coordinates: 3737716..3738582 (-)
• Length: 288 a.a.
• NCBI ID: WP_236450814.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain XX1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3732716..3743582

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L1776_RS17455	petA	3732887..3733480 (-)	594	WP_011912250.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-
L1776_RS17460	rpsI	3733735..3734127 (-)	393	WP_013981948.1	30S ribosomal protein S9	-
L1776_RS17465	rplM	3734143..3734571 (-)	429	WP_003287302.1	50S ribosomal protein L13	-
L1776_RS17470	-	3734992..3736032 (+)	1041	WP_236450813.1	NADP(H)-dependent aldo-keto reductase	-
L1776_RS17475	-	3736089..3736769 (+)	681	WP_013981946.1	energy-coupling factor ABC transporter permease	-
L1776_RS17480	yacG	3736782..3736979 (-)	198	WP_041771656.1	DNA gyrase inhibitor YacG	-
L1776_RS17485	coaE	3736976..3737584 (-)	609	WP_080940987.1	dephospho-CoA kinase	-
L1776_RS17490	pilD	3737716..3738582 (-)	867	WP_236450814.1	prepilin peptidase	Machinery gene
L1776_RS17495	pilC	3738587..3739804 (-)	1218	WP_236450815.1	type II secretion system F family protein	Machinery gene
L1776_RS17500	pilB	3739807..3741510 (-)	1704	WP_106442874.1	type IV-A pilus assembly ATPase PilB	Machinery gene
L1776_RS17505	pilA/pilAI	3741842..3742249 (+)	408	WP_419586397.1	pilin	Machinery gene
L1776_RS17510	pilA/pilAII	3742308..3742733 (+)	426	WP_236450817.1	pilin	Regulator

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31920.83 Da
• Isoelectric Point: 7.0086

>NTDB_id=648164 L1776_RS17490 WP_236450814.1 3737716..3738582(-) (pilD) [Stutzerimonas stutzeri strain XX1]
MFIDLLASHVLAFVLSAAVLGLLVGSFLNVVIHRLPIMMQSEWRMQAREYLEYPPEPIGERFNLLVPSSRCPHCGHRIRA
WENIPLVSWLALRGKCSSCQAPISCRYPLVELACGVLSGYVAWHFGFSWQAGAMLLLTWGLLAMSMIDVDHQLLPDSLVL
PLLWLGLIANSFALFASLEDALWGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVGA
VLGSILLRVQRAESSTPIPFGPYLAIAGWIALLWGDRITESYLQLARF

Nucleotide

• Length: 867 bp

>NTDB_id=648164 L1776_RS17490 WP_236450814.1 3737716..3738582(-) (pilD) [Stutzerimonas stutzeri strain XX1]
ATGTTTATTGATCTTTTGGCCAGCCATGTGCTGGCCTTTGTTTTGTCTGCTGCAGTGCTCGGTCTGCTGGTTGGCAGCTT
TCTCAATGTCGTAATTCACCGTTTGCCAATAATGATGCAGAGCGAATGGCGCATGCAGGCACGGGAATATTTGGAGTATC
CGCCCGAGCCAATTGGGGAGCGTTTCAATCTACTGGTGCCGAGTTCACGCTGCCCTCACTGCGGTCATCGTATCCGTGCC
TGGGAGAACATTCCCTTGGTCAGCTGGCTAGCGCTGCGTGGAAAGTGCTCGTCTTGTCAGGCGCCGATCAGCTGTCGATA
TCCGTTGGTTGAGCTGGCGTGTGGCGTGCTATCCGGATACGTGGCATGGCATTTCGGTTTTTCCTGGCAGGCAGGGGCGA
TGCTTCTGCTGACCTGGGGGTTGCTGGCGATGAGCATGATCGATGTCGATCATCAGTTGCTGCCTGACTCGCTCGTGCTG
CCGCTCTTATGGTTAGGGTTGATTGCCAACAGCTTTGCTCTGTTCGCCTCTCTCGAGGATGCGCTGTGGGGGGCGATAGC
CGGTTACCTGAGCCTATGGTCCGTTTATTGGCTGTTCAAGCTGGTCACAGGCAAAGAGGGTATGGGCTACGGCGATTTCA
AGCTGCTGGCGATGCTTGGTGCCTGGGGCGGCTGGCAGGTTCTGCCCCTCACTATCTTGCTGTCTTCGGTGGTCGGCGCC
GTTCTTGGCAGTATTTTGCTGAGGGTGCAGCGGGCTGAAAGCAGTACGCCCATTCCGTTCGGGCCGTATCTGGCGATAGC
GGGGTGGATTGCGTTGCTTTGGGGCGACCGAATTACCGAAAGCTACCTCCAGCTCGCTCGCTTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-125)

• Type IV leader peptidase family (Peptidase_A24) (136-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	57.455	95.486	0.549
pilD	Vibrio campbellii strain DS40M4	57.664	95.139	0.549
pilD	Acinetobacter baumannii D1279779	51.079	96.528	0.493
pilD	Acinetobacter nosocomialis M2	51.079	96.528	0.493
pilD	Neisseria gonorrhoeae MS11	52.471	91.319	0.479