Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   LQ335_RS16725 Genome accession   NZ_CP088244
Coordinates   3631524..3631940 (-) Length   138 a.a.
NCBI ID   WP_134968483.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain 2013-SM4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3626524..3636940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ335_RS16710 (LQ335_16710) pilR 3627498..3628871 (+) 1374 WP_075676419.1 sigma-54 dependent transcriptional regulator Regulator
  LQ335_RS16715 (LQ335_16715) pilB 3629045..3630775 (-) 1731 WP_134968484.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LQ335_RS16720 (LQ335_16720) - 3631000..3631407 (-) 408 WP_134968489.1 pilin -
  LQ335_RS16725 (LQ335_16725) pilA/pilAI 3631524..3631940 (-) 417 WP_134968483.1 pilin Machinery gene
  LQ335_RS16730 (LQ335_16730) pilC 3632297..3633556 (+) 1260 WP_134968482.1 type II secretion system F family protein Machinery gene
  LQ335_RS16735 (LQ335_16735) - 3633564..3634427 (+) 864 WP_065185263.1 A24 family peptidase -
  LQ335_RS16740 (LQ335_16740) coaE 3634439..3635050 (+) 612 WP_134968481.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 14579.04 Da        Isoelectric Point: 8.0989

>NTDB_id=633440 LQ335_RS16725 WP_134968483.1 3631524..3631940(-) (pilA/pilAI) [Stenotrophomonas maltophilia strain 2013-SM4]
MKNQKGFTLIELMIVVAIIAILAAIALPMYQDYVAKSQVTAGLAEITPGKTQYEVALNEGKTTVADIAELGLKDSDRCTI
SPITALSATGSIECTLKGNTKIIGKKIRVERAADGTWACKTDITAADKKYIPSGCVTG

Nucleotide


Download         Length: 417 bp        

>NTDB_id=633440 LQ335_RS16725 WP_134968483.1 3631524..3631940(-) (pilA/pilAI) [Stenotrophomonas maltophilia strain 2013-SM4]
ATGAAGAACCAGAAGGGCTTCACCCTTATCGAACTGATGATCGTCGTTGCGATCATCGCCATCCTGGCCGCCATCGCCCT
GCCGATGTACCAGGACTACGTGGCCAAGTCGCAGGTGACTGCTGGCCTGGCTGAAATCACCCCCGGCAAGACCCAGTACG
AAGTTGCCCTGAACGAAGGCAAGACCACCGTCGCCGACATCGCCGAACTGGGTCTGAAGGACTCTGACCGTTGCACCATC
TCGCCGATCACCGCCCTGAGCGCGACGGGCTCGATCGAGTGCACCCTGAAGGGCAACACCAAGATCATCGGCAAGAAGAT
CCGTGTGGAACGTGCCGCTGATGGCACCTGGGCTTGCAAGACCGATATCACCGCAGCGGACAAGAAGTACATCCCGAGCG
GCTGCGTCACTGGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

55.072

100

0.551
  pilA Acinetobacter baumannii strain A118

49.65

100

0.514
  pilA Pseudomonas aeruginosa PAK

43.709

100

0.478
  pilA/pilAII Pseudomonas stutzeri DSM 10701

44.203

100

0.442
  pilA Vibrio cholerae C6706

40.816

100

0.435
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

40.816

100

0.435
  pilA Vibrio cholerae strain A1552

40.816

100

0.435
  pilE Neisseria gonorrhoeae MS11

34.94

100

0.42
  comP Acinetobacter baylyi ADP1

38.255

100

0.413
  pilA2 Legionella pneumophila strain ERS1305867

38.686

99.275

0.384
  pilA2 Legionella pneumophila str. Paris

37.956

99.275

0.377
  pilA Vibrio parahaemolyticus RIMD 2210633

41.935

89.855

0.377