Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LQ335_RS16710 Genome accession   NZ_CP088244
Coordinates   3627498..3628871 (+) Length   457 a.a.
NCBI ID   WP_075676419.1    Uniprot ID   A0AAJ1ULX5
Organism   Stenotrophomonas maltophilia strain 2013-SM4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3622498..3633871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ335_RS16695 (LQ335_16695) sucD 3623347..3624222 (-) 876 WP_005418610.1 succinate--CoA ligase subunit alpha -
  LQ335_RS16700 (LQ335_16700) sucC 3624247..3625416 (-) 1170 WP_005418614.1 ADP-forming succinate--CoA ligase subunit beta -
  LQ335_RS16705 (LQ335_16705) - 3625824..3627437 (+) 1614 WP_134968485.1 ATP-binding protein -
  LQ335_RS16710 (LQ335_16710) pilR 3627498..3628871 (+) 1374 WP_075676419.1 sigma-54 dependent transcriptional regulator Regulator
  LQ335_RS16715 (LQ335_16715) pilB 3629045..3630775 (-) 1731 WP_134968484.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LQ335_RS16720 (LQ335_16720) - 3631000..3631407 (-) 408 WP_134968489.1 pilin -
  LQ335_RS16725 (LQ335_16725) pilA/pilAI 3631524..3631940 (-) 417 WP_134968483.1 pilin Machinery gene
  LQ335_RS16730 (LQ335_16730) pilC 3632297..3633556 (+) 1260 WP_134968482.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49654.90 Da        Isoelectric Point: 6.4421

>NTDB_id=633438 LQ335_RS16710 WP_075676419.1 3627498..3628871(+) (pilR) [Stenotrophomonas maltophilia strain 2013-SM4]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIAVLRGLVKHALELNNTERPAPGPAAEQGARLLGDSPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPE
LAASVLARLARSHGRPTPLLAPSALDALAQYAFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRTPGSAAHAEAV
VDLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=633438 LQ335_RS16710 WP_075676419.1 3627498..3628871(+) (pilR) [Stenotrophomonas maltophilia strain 2013-SM4]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTACTGACGCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCAGCCAACCTTGCCGAAGCGCGCGAACTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCGGACGGCAACGGCATCGAGCTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACTGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
GGACATCGCCGTGCTGCGTGGCCTGGTCAAGCACGCGCTGGAACTGAACAACACCGAGCGCCCTGCACCCGGCCCTGCCG
CCGAACAGGGCGCACGCCTGCTTGGCGACTCGCCGGCCATGGACGTGCTGCGTACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGTGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGCCCAGGGCGCCCG
CGCGGCCGGCCCGTTCGTACCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCA
AGGGCAGCTTCAGCGGCGCCCACGCCGACAAGCCCGGGCTGTTCCAGGCCGCCCATGGCGGCACCCTGTTCCTGGACGAA
GTGGCCGAGCTGCCCCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCGCGGTCGGCGCCGC
CAACGAGGAGCCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAGGGTGCCGCCGCTGCGCGAGCGTCGCCAGGACCTGCCGGAA
CTGGCCGCGTCGGTGCTGGCACGGCTGGCCCGCAGCCACGGCCGCCCGACGCCGTTGCTGGCGCCGTCGGCATTGGATGC
ACTGGCCCAGTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTGGAACGCGCGCTGGCCCTGGCCGAAGAAG
ACCGCATCGGCGCCGACGACCTGCGCCTGCCGCAGCATGCCCCGCGCACGCCCGGCAGCGCAGCACACGCCGAAGCCGTG
GTGGACCTGCAGCCCGGCAGCGCCGCCCTGCCCTCGTACATCGAACAGCTCGAACGCAGCGCCATCCAGCGCGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAGTTGGGGATTACCTTCCGCGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(414-454)

Sigma-54 interaction domain (Sigma54_activat)

(141-306)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.939

99.781

0.628
  pilR Acinetobacter baumannii strain A118

48.38

100

0.49