Detailed information NTG0633441

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: LQ335_RS16730
• Genome accession: NZ_CP088244
• Coordinates: 3632297..3633556 (+)
• Length: 419 a.a.
• NCBI ID: WP_134968482.1
• Uniprot ID: -
• Organism: Stenotrophomonas maltophilia strain 2013-SM4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3627297..3638556

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LQ335_RS16710 (LQ335_16710)	pilR	3627498..3628871 (+)	1374	WP_075676419.1	sigma-54 dependent transcriptional regulator	Regulator
LQ335_RS16715 (LQ335_16715)	pilB	3629045..3630775 (-)	1731	WP_134968484.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LQ335_RS16720 (LQ335_16720)	-	3631000..3631407 (-)	408	WP_134968489.1	pilin	-
LQ335_RS16725 (LQ335_16725)	pilA/pilAI	3631524..3631940 (-)	417	WP_134968483.1	pilin	Machinery gene
LQ335_RS16730 (LQ335_16730)	pilC	3632297..3633556 (+)	1260	WP_134968482.1	type II secretion system F family protein	Machinery gene
LQ335_RS16735 (LQ335_16735)	-	3633564..3634427 (+)	864	WP_065185263.1	A24 family peptidase	-
LQ335_RS16740 (LQ335_16740)	coaE	3634439..3635050 (+)	612	WP_134968481.1	dephospho-CoA kinase	-

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 45689.07 Da
• Isoelectric Point: 10.1977

>NTDB_id=633441 LQ335_RS16730 WP_134968482.1 3632297..3633556(+) (pilC) [Stenotrophomonas maltophilia strain 2013-SM4]
MSVSRSAIKKEPVARSTTELQPFVWVGTDKRGVKMKGEQAAKNANLLRAELRRQGITPGTVKLKPKPLFGGSGSRISPKD
IAFFSRQMATMMKSGVPIVSSLEIIASGHKNPRMKKMVDGLRTDIEGGSSLYEAVSKYPVQFDELYRNLVKAGEGAGVLE
TVLDTVANYKENIEALKGKIKKAMFYPAMVLAVALLVSGILLVWVVPQFEDVFKGFGADLPAFTQMIVNLSRFMVSWWWL
ILLVIIGSIVGFIAAYKRSPKMQHSMDRLVLKLPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNTVYEH
AVLRMRDDVSVGYPVNMAMKQTALFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPIIMVIIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide

• Length: 1260 bp

>NTDB_id=633441 LQ335_RS16730 WP_134968482.1 3632297..3633556(+) (pilC) [Stenotrophomonas maltophilia strain 2013-SM4]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAGGAGCCCGTGGCGCGCAGCACCACGGAGCTGCAGCCGTTTGTCTGGGTGGG
GACCGACAAGCGGGGCGTGAAGATGAAAGGCGAGCAGGCCGCAAAGAATGCGAACCTGCTGCGGGCTGAGTTGCGCCGGC
AAGGCATTACGCCAGGCACGGTCAAGCTCAAGCCCAAACCGTTGTTCGGTGGCTCCGGCAGCCGAATCTCGCCGAAGGAC
ATCGCTTTCTTCAGCCGGCAGATGGCCACCATGATGAAGTCCGGTGTGCCTATCGTCAGTTCGCTAGAAATCATTGCCAG
CGGGCACAAGAACCCGCGCATGAAGAAAATGGTGGATGGCCTGCGCACCGATATCGAGGGCGGATCATCGCTCTACGAAG
CGGTCAGCAAGTATCCGGTGCAGTTCGACGAGCTCTACCGCAATCTGGTCAAGGCGGGCGAGGGTGCCGGCGTTCTGGAA
ACAGTGCTGGACACTGTCGCCAACTATAAAGAGAACATTGAAGCCCTGAAGGGCAAGATCAAGAAGGCAATGTTCTATCC
CGCCATGGTGCTGGCAGTTGCCCTGCTGGTCAGTGGCATCCTGCTGGTCTGGGTGGTTCCTCAGTTCGAAGATGTATTCA
AGGGTTTTGGCGCGGACCTGCCCGCGTTCACCCAGATGATCGTCAATCTGTCCCGCTTCATGGTCTCGTGGTGGTGGCTG
ATCCTGCTGGTCATCATCGGATCAATCGTCGGCTTCATTGCCGCATATAAACGGTCGCCGAAGATGCAGCACAGCATGGA
CCGGCTGGTCCTGAAGCTGCCGGTCATCGGGCAGATCATGCACAACAGCTCGATCGCCCGCTTCGCCCGTACCACCGCTG
TCACCTTCAAGGCCGGCGTACCTTTGGTGGAGGCCCTGGGCATCGTGGCCGGCGCCACCGGCAATACGGTTTACGAGCAT
GCCGTATTGCGCATGCGTGATGACGTATCGGTCGGTTACCCGGTCAACATGGCCATGAAGCAGACCGCCCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCCGGTGCCCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATGCCGTTGACGCCCTGAGCAGCCTGCTGGAGCCGATCATCATGGTGATCATTGGTACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTGCCGATCTTCAAGCTCGCTTCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (84-207)

• Type II secretion system (T2SS), protein F (T2SSF) (288-410)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Acinetobacter baylyi ADP1	52.956	96.897	0.513
pilC	Pseudomonas stutzeri DSM 10701	53.03	94.511	0.501
pilC	Legionella pneumophila strain ERS1305867	51.733	96.42	0.499
pilC	Acinetobacter baumannii D1279779	51.889	94.749	0.492
pilG	Neisseria gonorrhoeae MS11	42.965	94.988	0.408
pilG	Neisseria meningitidis 44/76-A	42.462	94.988	0.403
pilC	Vibrio cholerae strain A1552	40.887	96.897	0.396
pilC	Vibrio campbellii strain DS40M4	39.651	95.704	0.379