Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | CX511_RS24690 | Genome accession | NZ_CP088149 |
| Coordinates | 5493349..5494377 (-) | Length | 342 a.a. |
| NCBI ID | WP_045181706.1 | Uniprot ID | A0AB39B1X7 |
| Organism | Pseudomonas sp. S06B 330 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5488349..5499377
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CX511_RS24670 | argS | 5489592..5491328 (+) | 1737 | WP_101293746.1 | arginine--tRNA ligase | - |
| CX511_RS24675 | - | 5491330..5492019 (+) | 690 | WP_045181714.1 | SPOR domain-containing protein | - |
| CX511_RS24680 | - | 5492061..5492480 (-) | 420 | WP_045181711.1 | NINE protein | - |
| CX511_RS24685 | - | 5492729..5493352 (+) | 624 | WP_045181709.1 | C40 family peptidase | - |
| CX511_RS24690 | pilT | 5493349..5494377 (-) | 1029 | WP_045181706.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| CX511_RS24695 | - | 5494444..5495130 (+) | 687 | WP_101293745.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| CX511_RS24700 | proC | 5495169..5495987 (+) | 819 | WP_101293744.1 | pyrroline-5-carboxylate reductase | - |
| CX511_RS24705 | - | 5495998..5496588 (+) | 591 | WP_045181697.1 | YggT family protein | - |
| CX511_RS24710 | - | 5496741..5497880 (+) | 1140 | WP_045181694.1 | homoserine O-acetyltransferase | - |
| CX511_RS24715 | metW | 5497888..5498508 (+) | 621 | WP_045181692.1 | methionine biosynthesis protein MetW | - |
| CX511_RS24720 | - | 5498533..5498967 (+) | 435 | WP_101293743.1 | DUF4426 domain-containing protein | - |
Sequence
Protein
Download Length: 342 a.a. Molecular weight: 37197.94 Da Isoelectric Point: 6.5030
>NTDB_id=632929 CX511_RS24690 WP_045181706.1 5493349..5494377(-) (pilT) [Pseudomonas sp. S06B 330]
MDVTELLALAIREGASDLHVATDEVPAIRLDGRICRLQLPTLSAEQVQKMLAQLMSDEQKKDFETLLELDFSLSMPGLGR
FRVNAFNQLRGSGAVLRVIPRQVSSLAELGLGDVFRRIAELPSGLVLVTGPTGSGKSTTLAALLDHLNRERQLHILTLED
PIEFIHSPQRSLISQREIGRHSHGFTQALRAALRQDPDVIMLGELRDQESIRLALSAAETGHLVLATLHTVSAAKAIDRL
VDVFAAEEKQLVRAMLSEALQAVVAQVLVERVAGGRVAAHEILLATPAVRNLIREGKVAQLYSTMQMGGAVGMQTLEGCL
QGLSARGEIRPDCAREWAHGSF
MDVTELLALAIREGASDLHVATDEVPAIRLDGRICRLQLPTLSAEQVQKMLAQLMSDEQKKDFETLLELDFSLSMPGLGR
FRVNAFNQLRGSGAVLRVIPRQVSSLAELGLGDVFRRIAELPSGLVLVTGPTGSGKSTTLAALLDHLNRERQLHILTLED
PIEFIHSPQRSLISQREIGRHSHGFTQALRAALRQDPDVIMLGELRDQESIRLALSAAETGHLVLATLHTVSAAKAIDRL
VDVFAAEEKQLVRAMLSEALQAVVAQVLVERVAGGRVAAHEILLATPAVRNLIREGKVAQLYSTMQMGGAVGMQTLEGCL
QGLSARGEIRPDCAREWAHGSF
Nucleotide
Download Length: 1029 bp
>NTDB_id=632929 CX511_RS24690 WP_045181706.1 5493349..5494377(-) (pilT) [Pseudomonas sp. S06B 330]
ATGGATGTGACTGAACTGCTGGCCCTGGCAATAAGGGAAGGGGCTTCGGACCTGCACGTGGCCACCGATGAGGTGCCTGC
GATTCGTTTGGACGGGCGTATTTGCCGCCTGCAGCTGCCGACGTTGAGCGCTGAGCAGGTGCAGAAGATGCTCGCGCAGC
TCATGTCCGATGAGCAAAAAAAGGATTTTGAAACACTCTTGGAACTCGATTTCTCACTGTCCATGCCCGGACTTGGTCGT
TTTCGCGTCAATGCCTTCAACCAGTTGCGTGGCTCAGGGGCGGTGCTGCGGGTCATTCCTCGTCAGGTGAGTAGCCTGGC
CGAATTGGGCTTGGGTGACGTGTTTCGGCGGATTGCCGAGTTGCCCAGCGGCCTGGTGCTGGTTACAGGGCCTACTGGTT
CGGGCAAATCCACCACGTTGGCAGCGCTGCTGGATCATCTGAACCGTGAGCGGCAGTTACACATTCTCACGTTGGAAGAC
CCCATCGAATTTATCCACAGCCCGCAGCGCAGCCTGATCAGTCAACGCGAGATCGGCAGGCACAGTCATGGTTTTACCCA
GGCGCTACGCGCAGCGCTGCGTCAGGATCCGGATGTGATCATGCTCGGTGAGCTGCGCGACCAGGAGAGTATCCGTCTGG
CCCTCAGTGCTGCTGAAACGGGGCACTTGGTGCTGGCGACCCTGCACACGGTATCGGCCGCAAAGGCGATCGATCGCCTG
GTGGATGTGTTTGCCGCTGAGGAGAAGCAACTAGTGCGCGCCATGCTCAGCGAAGCGTTGCAGGCGGTGGTGGCCCAGGT
GCTGGTCGAGCGAGTCGCTGGTGGCCGGGTGGCAGCCCATGAAATTTTGCTGGCCACGCCTGCCGTGCGCAATCTGATCC
GCGAAGGAAAGGTCGCGCAACTGTACTCGACGATGCAGATGGGTGGGGCGGTGGGCATGCAGACCCTGGAGGGCTGCCTG
CAAGGCCTGTCAGCGCGTGGGGAGATCAGGCCAGACTGCGCCCGTGAATGGGCGCATGGCAGTTTTTAG
ATGGATGTGACTGAACTGCTGGCCCTGGCAATAAGGGAAGGGGCTTCGGACCTGCACGTGGCCACCGATGAGGTGCCTGC
GATTCGTTTGGACGGGCGTATTTGCCGCCTGCAGCTGCCGACGTTGAGCGCTGAGCAGGTGCAGAAGATGCTCGCGCAGC
TCATGTCCGATGAGCAAAAAAAGGATTTTGAAACACTCTTGGAACTCGATTTCTCACTGTCCATGCCCGGACTTGGTCGT
TTTCGCGTCAATGCCTTCAACCAGTTGCGTGGCTCAGGGGCGGTGCTGCGGGTCATTCCTCGTCAGGTGAGTAGCCTGGC
CGAATTGGGCTTGGGTGACGTGTTTCGGCGGATTGCCGAGTTGCCCAGCGGCCTGGTGCTGGTTACAGGGCCTACTGGTT
CGGGCAAATCCACCACGTTGGCAGCGCTGCTGGATCATCTGAACCGTGAGCGGCAGTTACACATTCTCACGTTGGAAGAC
CCCATCGAATTTATCCACAGCCCGCAGCGCAGCCTGATCAGTCAACGCGAGATCGGCAGGCACAGTCATGGTTTTACCCA
GGCGCTACGCGCAGCGCTGCGTCAGGATCCGGATGTGATCATGCTCGGTGAGCTGCGCGACCAGGAGAGTATCCGTCTGG
CCCTCAGTGCTGCTGAAACGGGGCACTTGGTGCTGGCGACCCTGCACACGGTATCGGCCGCAAAGGCGATCGATCGCCTG
GTGGATGTGTTTGCCGCTGAGGAGAAGCAACTAGTGCGCGCCATGCTCAGCGAAGCGTTGCAGGCGGTGGTGGCCCAGGT
GCTGGTCGAGCGAGTCGCTGGTGGCCGGGTGGCAGCCCATGAAATTTTGCTGGCCACGCCTGCCGTGCGCAATCTGATCC
GCGAAGGAAAGGTCGCGCAACTGTACTCGACGATGCAGATGGGTGGGGCGGTGGGCATGCAGACCCTGGAGGGCTGCCTG
CAAGGCCTGTCAGCGCGTGGGGAGATCAGGCCAGACTGCGCCCGTGAATGGGCGCATGGCAGTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
61.243 |
98.83 |
0.605 |
| pilT | Pseudomonas aeruginosa PAK |
60.947 |
98.83 |
0.602 |
| pilT | Acinetobacter baylyi ADP1 |
59.172 |
98.83 |
0.585 |
| pilT | Acinetobacter baumannii D1279779 |
59.172 |
98.83 |
0.585 |
| pilT | Acinetobacter baumannii strain A118 |
59.172 |
98.83 |
0.585 |
| pilT | Acinetobacter nosocomialis M2 |
58.876 |
98.83 |
0.582 |
| pilT | Neisseria meningitidis 8013 |
55.263 |
100 |
0.553 |
| pilT | Neisseria gonorrhoeae MS11 |
54.971 |
100 |
0.55 |
| pilT | Vibrio cholerae strain A1552 |
56.269 |
95.614 |
0.538 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
56.269 |
95.614 |
0.538 |
| pilT | Legionella pneumophila strain ERS1305867 |
54.142 |
98.83 |
0.535 |
| pilT | Legionella pneumophila strain Lp02 |
54.142 |
98.83 |
0.535 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
50.737 |
99.123 |
0.503 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.606 |
96.491 |
0.392 |
| pilU | Vibrio cholerae strain A1552 |
38.788 |
96.491 |
0.374 |