Detailed information
Bioinformatically predicted
Overview
| Name | comGC/cglC | Type | Machinery gene |
| Locus tag | N596_RS08125 | Genome accession | NC_022584 |
| Coordinates | 1715087..1715404 (+) | Length | 105 a.a. |
| NCBI ID | WP_023027561.1 | Uniprot ID | - |
| Organism | Streptococcus ilei | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1710087..1720404
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N596_RS08105 (N596_08320) | - | 1711391..1712494 (+) | 1104 | WP_006595140.1 | glycosyl hydrolase family 8 | - |
| N596_RS08110 (N596_08325) | - | 1712701..1713078 (+) | 378 | WP_023027558.1 | DUF1033 family protein | - |
| N596_RS08115 (N596_08330) | comYA | 1713185..1714144 (+) | 960 | WP_023027559.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| N596_RS08120 (N596_08335) | comYB | 1714068..1715090 (+) | 1023 | WP_023027560.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| N596_RS08125 (N596_08340) | comGC/cglC | 1715087..1715404 (+) | 318 | WP_023027561.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| N596_RS08130 (N596_08345) | comGD/cglD | 1715394..1715798 (+) | 405 | WP_243635769.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| N596_RS08135 (N596_08350) | comGE | 1715764..1716057 (+) | 294 | WP_042361331.1 | competence type IV pilus minor pilin ComGE | - |
| N596_RS08140 (N596_08355) | comGF/cglF | 1716041..1716493 (+) | 453 | WP_042361447.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| N596_RS08145 (N596_08360) | comGG | 1716459..1716905 (+) | 447 | WP_006595132.1 | competence type IV pilus minor pilin ComGG | - |
| N596_RS08150 (N596_08365) | comYH | 1716937..1717890 (+) | 954 | WP_042361332.1 | class I SAM-dependent methyltransferase | Machinery gene |
| N596_RS08155 (N596_08370) | - | 1717939..1719135 (+) | 1197 | WP_023027566.1 | acetate kinase | - |
| N596_RS08160 (N596_08375) | - | 1719288..1719962 (+) | 675 | WP_258025867.1 | CPBP family intramembrane glutamic endopeptidase | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11689.63 Da Isoelectric Point: 9.8248
>NTDB_id=62972 N596_RS08125 WP_023027561.1 1715087..1715404(+) (comGC/cglC) [Streptococcus ilei]
MKSLRTLKVKAFTLIEMLVVLLIISVLLLLFVPNLTKQKDSVTDTGNRAVVKVVESQAELYELNHQNEKASLSKLVAEGQ
ITQKQAEAYRAHYVKNAGDHRAVGD
MKSLRTLKVKAFTLIEMLVVLLIISVLLLLFVPNLTKQKDSVTDTGNRAVVKVVESQAELYELNHQNEKASLSKLVAEGQ
ITQKQAEAYRAHYVKNAGDHRAVGD
Nucleotide
Download Length: 318 bp
>NTDB_id=62972 N596_RS08125 WP_023027561.1 1715087..1715404(+) (comGC/cglC) [Streptococcus ilei]
ATGAAATCATTGCGTACACTCAAAGTAAAAGCTTTTACGCTGATTGAAATGCTAGTTGTTTTGCTGATTATTAGTGTTCT
TCTCTTGCTCTTTGTTCCGAACTTGACCAAGCAGAAAGATTCGGTAACGGATACAGGAAATCGAGCAGTTGTCAAAGTTG
TGGAGAGTCAGGCTGAGCTCTATGAACTCAATCATCAGAATGAAAAAGCCAGTCTTTCTAAGCTTGTCGCAGAAGGACAA
ATCACTCAAAAACAAGCAGAAGCCTACCGTGCTCACTATGTGAAGAATGCAGGTGATCACCGTGCGGTTGGAGATTAA
ATGAAATCATTGCGTACACTCAAAGTAAAAGCTTTTACGCTGATTGAAATGCTAGTTGTTTTGCTGATTATTAGTGTTCT
TCTCTTGCTCTTTGTTCCGAACTTGACCAAGCAGAAAGATTCGGTAACGGATACAGGAAATCGAGCAGTTGTCAAAGTTG
TGGAGAGTCAGGCTGAGCTCTATGAACTCAATCATCAGAATGAAAAAGCCAGTCTTTCTAAGCTTGTCGCAGAAGGACAA
ATCACTCAAAAACAAGCAGAAGCCTACCGTGCTCACTATGTGAAGAATGCAGGTGATCACCGTGCGGTTGGAGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC/cglC | Streptococcus mitis SK321 |
69.524 |
100 |
0.695 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
68.571 |
100 |
0.686 |
| comGC/cglC | Streptococcus pneumoniae D39 |
66.667 |
100 |
0.667 |
| comGC/cglC | Streptococcus pneumoniae R6 |
66.667 |
100 |
0.667 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
66.667 |
100 |
0.667 |
| comYC | Streptococcus mutans UA159 |
66.667 |
100 |
0.667 |
| comYC | Streptococcus mutans UA140 |
66.667 |
100 |
0.667 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
66.667 |
100 |
0.667 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
70.526 |
90.476 |
0.638 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
61.224 |
93.333 |
0.571 |
| comYC | Streptococcus suis isolate S10 |
64.045 |
84.762 |
0.543 |
| comGC | Staphylococcus aureus MW2 |
51.282 |
74.286 |
0.381 |
| comGC | Staphylococcus aureus N315 |
51.282 |
74.286 |
0.381 |