Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECKY1497_RS16530 Genome accession   NZ_AP019803
Coordinates   3447568..3448044 (+) Length   158 a.a.
NCBI ID   WP_001186761.1    Uniprot ID   -
Organism   Escherichia coli strain KY 1497     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3442568..3453044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECKY1497_RS16510 (ECKY1497_031530) - 3445128..3445583 (+) 456 WP_001309747.1 IrmA family protein -
  ECKY1497_RS16515 - 3445726..3445815 (+) 90 WP_225385657.1 DUF905 family protein -
  ECKY1497_RS16520 (ECKY1497_031540) - 3445994..3446815 (+) 822 WP_099004483.1 DUF932 domain-containing protein -
  ECKY1497_RS16525 (ECKY1497_031550) - 3447079..3447552 (+) 474 WP_023351915.1 antirestriction protein -
  ECKY1497_RS16530 (ECKY1497_031560) radC 3447568..3448044 (+) 477 WP_001186761.1 RadC family protein Machinery gene
  ECKY1497_RS16535 (ECKY1497_031570) - 3448107..3448328 (+) 222 WP_000692315.1 DUF987 domain-containing protein -
  ECKY1497_RS16540 (ECKY1497_031580) - 3448347..3448991 (+) 645 WP_000086757.1 hypothetical protein -
  ECKY1497_RS16545 (ECKY1497_031590) - 3449041..3449421 (+) 381 WP_001285599.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECKY1497_RS16550 (ECKY1497_031600) - 3449498..3449875 (+) 378 WP_000854689.1 TA system toxin CbtA family protein -
  ECKY1497_RS16555 (ECKY1497_031610) - 3449872..3450360 (+) 489 WP_000761698.1 DUF5983 family protein -
  ECKY1497_RS16560 (ECKY1497_031620) - 3450377..3450574 (+) 198 WP_000839250.1 DUF957 domain-containing protein -
  ECKY1497_RS16565 (ECKY1497_031630) - 3450659..3451504 (+) 846 WP_001446750.1 DUF4942 domain-containing protein -
  ECKY1497_RS16570 (ECKY1497_031640) - 3451573..3451968 (+) 396 WP_000208382.1 DUF6088 family protein -
  ECKY1497_RS16575 (ECKY1497_031650) - 3451961..3452894 (+) 934 Protein_3256 nucleotidyl transferase AbiEii/AbiGii toxin family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17635.23 Da        Isoelectric Point: 7.2523

>NTDB_id=62975 ECKY1497_RS16530 WP_001186761.1 3447568..3448044(+) (radC) [Escherichia coli strain KY 1497]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALHHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=62975 ECKY1497_RS16530 WP_001186761.1 3447568..3448044(+) (radC) [Escherichia coli strain KY 1497]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTTATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAACGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGCACCACAATGCCGCAGCCGTGGTGCTGGCACA
TAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGGCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386

Multiple sequence alignment