Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   N596_RS08130 Genome accession   NC_022584
Coordinates   1715394..1715798 (+) Length   134 a.a.
NCBI ID   WP_243635769.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1710394..1720798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N596_RS08105 (N596_08320) - 1711391..1712494 (+) 1104 WP_006595140.1 glycosyl hydrolase family 8 -
  N596_RS08110 (N596_08325) - 1712701..1713078 (+) 378 WP_023027558.1 DUF1033 family protein -
  N596_RS08115 (N596_08330) comYA 1713185..1714144 (+) 960 WP_023027559.1 competence type IV pilus ATPase ComGA Machinery gene
  N596_RS08120 (N596_08335) comYB 1714068..1715090 (+) 1023 WP_023027560.1 competence type IV pilus assembly protein ComGB Machinery gene
  N596_RS08125 (N596_08340) comGC/cglC 1715087..1715404 (+) 318 WP_023027561.1 competence type IV pilus major pilin ComGC Machinery gene
  N596_RS08130 (N596_08345) comGD/cglD 1715394..1715798 (+) 405 WP_243635769.1 competence type IV pilus minor pilin ComGD Machinery gene
  N596_RS08135 (N596_08350) comGE 1715764..1716057 (+) 294 WP_042361331.1 competence type IV pilus minor pilin ComGE -
  N596_RS08140 (N596_08355) comGF/cglF 1716041..1716493 (+) 453 WP_042361447.1 competence type IV pilus minor pilin ComGF Machinery gene
  N596_RS08145 (N596_08360) comGG 1716459..1716905 (+) 447 WP_006595132.1 competence type IV pilus minor pilin ComGG -
  N596_RS08150 (N596_08365) comYH 1716937..1717890 (+) 954 WP_042361332.1 class I SAM-dependent methyltransferase Machinery gene
  N596_RS08155 (N596_08370) - 1717939..1719135 (+) 1197 WP_023027566.1 acetate kinase -
  N596_RS08160 (N596_08375) - 1719288..1719962 (+) 675 WP_258025867.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15024.41 Da        Isoelectric Point: 7.2773

>NTDB_id=62973 N596_RS08130 WP_243635769.1 1715394..1715798(+) (comGD/cglD) [Streptococcus ilei]
MEIKAFTLLESLLTLGIVSLLCWLLAGSVHQGFGQVEETLFFSEFERVYQETQKMSIAREERTLLSIDHVGVHSPYQELP
LPKGVKLIKEKQLTFDPAGGNSSLTKIQFQTEKEVVTYQLAIGNGKIKKSTAPR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=62973 N596_RS08130 WP_243635769.1 1715394..1715798(+) (comGD/cglD) [Streptococcus ilei]
TTGGAGATTAAGGCTTTTACCCTTCTAGAGAGCTTACTAACTCTAGGTATCGTCAGCCTTTTATGCTGGCTGCTAGCTGG
ATCAGTTCATCAGGGCTTTGGGCAGGTGGAAGAAACATTGTTTTTCTCAGAATTTGAACGGGTCTATCAAGAGACACAAA
AGATGAGCATTGCAAGAGAGGAAAGAACCCTCCTTTCCATCGACCATGTGGGGGTTCACAGCCCCTATCAAGAACTGCCA
CTTCCAAAAGGGGTGAAACTGATTAAAGAGAAGCAACTAACGTTTGATCCAGCAGGAGGCAATTCAAGCTTGACCAAGAT
TCAATTTCAGACAGAGAAAGAGGTGGTGACCTATCAGTTGGCAATTGGGAATGGAAAAATTAAGAAATCGACAGCTCCCC
GCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus pneumoniae TIGR4

53.543

94.776

0.507
  comGD/cglD Streptococcus pneumoniae Rx1

52.756

94.776

0.5
  comGD/cglD Streptococcus pneumoniae D39

52.756

94.776

0.5
  comGD/cglD Streptococcus pneumoniae R6

52.756

94.776

0.5
  comGD/cglD Streptococcus mitis NCTC 12261

51.938

96.269

0.5
  comGD/cglD Streptococcus mitis SK321

51.969

94.776

0.493
  comYD Streptococcus gordonii str. Challis substr. CH1

49.618

97.761

0.485
  comYD Streptococcus mutans UA140

49.612

96.269

0.478
  comYD Streptococcus mutans UA159

49.612

96.269

0.478

Multiple sequence alignment