Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   N596_RS08120 Genome accession   NC_022584
Coordinates   1714068..1715090 (+) Length   340 a.a.
NCBI ID   WP_023027560.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1709068..1720090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N596_RS08095 (N596_08310) - 1709141..1709929 (+) 789 WP_023027556.1 hypothetical protein -
  N596_RS08100 (N596_08315) - 1710072..1711382 (+) 1311 WP_023027557.1 glycosyltransferase family 2 protein -
  N596_RS08105 (N596_08320) - 1711391..1712494 (+) 1104 WP_006595140.1 glycosyl hydrolase family 8 -
  N596_RS08110 (N596_08325) - 1712701..1713078 (+) 378 WP_023027558.1 DUF1033 family protein -
  N596_RS08115 (N596_08330) comYA 1713185..1714144 (+) 960 WP_023027559.1 competence type IV pilus ATPase ComGA Machinery gene
  N596_RS08120 (N596_08335) comYB 1714068..1715090 (+) 1023 WP_023027560.1 competence type IV pilus assembly protein ComGB Machinery gene
  N596_RS08125 (N596_08340) comGC/cglC 1715087..1715404 (+) 318 WP_023027561.1 competence type IV pilus major pilin ComGC Machinery gene
  N596_RS08130 (N596_08345) comGD/cglD 1715394..1715798 (+) 405 WP_243635769.1 competence type IV pilus minor pilin ComGD Machinery gene
  N596_RS08135 (N596_08350) comGE 1715764..1716057 (+) 294 WP_042361331.1 competence type IV pilus minor pilin ComGE -
  N596_RS08140 (N596_08355) comGF/cglF 1716041..1716493 (+) 453 WP_042361447.1 competence type IV pilus minor pilin ComGF Machinery gene
  N596_RS08145 (N596_08360) comGG 1716459..1716905 (+) 447 WP_006595132.1 competence type IV pilus minor pilin ComGG -
  N596_RS08150 (N596_08365) comYH 1716937..1717890 (+) 954 WP_042361332.1 class I SAM-dependent methyltransferase Machinery gene
  N596_RS08155 (N596_08370) - 1717939..1719135 (+) 1197 WP_023027566.1 acetate kinase -
  N596_RS08160 (N596_08375) - 1719288..1719962 (+) 675 WP_258025867.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 38843.88 Da        Isoelectric Point: 9.7545

>NTDB_id=62971 N596_RS08120 WP_023027560.1 1714068..1715090(+) (comYB) [Streptococcus ilei]
MKRDILSWIRRRPKKLSIAKQEHVIELFHNLYSSGFHLSEVIDFLRRSHLVEADFVERMQVGLANGKPLSAILSDLGFSD
QVTTQLALAEQHGNVTLSLEKIRSYLENLTQVRKKLVEVATYPVLLLGFLMFIMLGLKNYLLPQLESQNGATRLISVFPQ
YVLLGSVLLAIGVLILLFLGRRAKRLALVSFLATLPFLRPFLQDYLTAFYAREWGSMIAQGLELNQIFPMMQGQRSRLFR
EIGQDLEVALARGTSFSDHIQTYPFFKRELALMIEYGEAKSKLGSELEIYADKTWAGFFHRLNKAMNVVQPLVFVFVALM
IVLLYAAMLLPIYENLEVPL

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=62971 N596_RS08120 WP_023027560.1 1714068..1715090(+) (comYB) [Streptococcus ilei]
ATGAAGCGGGACATATTGAGTTGGATCAGGCGCAGGCCGAAAAAATTATCGATTGCCAAGCAAGAGCATGTCATTGAGCT
CTTTCACAATCTCTACAGTAGTGGCTTTCATCTATCAGAGGTCATCGACTTCCTACGTCGGAGCCATTTGGTAGAGGCAG
ATTTTGTTGAAAGAATGCAAGTTGGACTTGCCAACGGCAAGCCCTTGTCAGCCATTCTTTCTGATCTAGGCTTTTCCGAT
CAGGTAACGACTCAATTAGCACTGGCAGAGCAGCATGGAAATGTCACCTTAAGTTTAGAAAAAATCCGTAGCTACCTGGA
AAATCTGACCCAGGTTCGAAAGAAACTAGTTGAGGTGGCCACCTATCCAGTACTATTGTTGGGATTTTTGATGTTCATTA
TGCTGGGTCTGAAAAACTATCTCTTGCCTCAGTTGGAGAGTCAAAATGGTGCGACACGATTGATCAGTGTCTTTCCCCAG
TATGTTTTGTTAGGAAGTGTGTTACTAGCAATTGGAGTTTTGATTCTCCTCTTCCTAGGTCGTCGAGCCAAGCGTCTGGC
CCTTGTTTCGTTTTTGGCTACCCTTCCTTTTCTTCGCCCCTTCTTACAGGATTATCTGACGGCTTTTTATGCTCGAGAAT
GGGGGAGTATGATTGCCCAAGGGTTGGAGCTGAATCAAATCTTTCCTATGATGCAGGGGCAACGTTCCCGTCTGTTTCGT
GAGATTGGACAGGATTTGGAAGTAGCCTTGGCTCGGGGGACTTCTTTTTCTGACCATATTCAGACCTATCCTTTCTTTAA
GCGAGAGTTGGCCCTCATGATTGAATATGGAGAGGCCAAGTCCAAGCTCGGTAGTGAGCTGGAGATCTACGCAGACAAGA
CCTGGGCAGGCTTTTTCCATCGTTTGAACAAGGCTATGAATGTCGTCCAACCACTGGTCTTTGTCTTTGTCGCCCTTATG
ATTGTTTTGCTCTATGCAGCCATGTTGCTGCCTATTTATGAAAATTTGGAGGTTCCTTTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(211-331)

Type II secretion system (T2SS), protein F (T2SSF)

(26-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

61.404

100

0.618
  comGB/cglB Streptococcus mitis NCTC 12261

59.821

98.824

0.591
  comGB/cglB Streptococcus pneumoniae Rx1

59.524

98.824

0.588
  comGB/cglB Streptococcus pneumoniae D39

59.524

98.824

0.588
  comGB/cglB Streptococcus pneumoniae R6

59.524

98.824

0.588
  comGB/cglB Streptococcus pneumoniae TIGR4

59.524

98.824

0.588
  comGB/cglB Streptococcus mitis SK321

59.226

98.824

0.585
  comYB Streptococcus mutans UA140

60.252

93.235

0.562
  comYB Streptococcus mutans UA159

60.252

93.235

0.562
  comGB Lactococcus lactis subsp. cremoris KW2

48.397

100

0.488

Multiple sequence alignment