Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   LMH93_RS25540 Genome accession   NZ_CP087160
Coordinates   5681061..5682059 (-) Length   332 a.a.
NCBI ID   WP_098089513.1    Uniprot ID   -
Organism   Pseudomonas sp. CIP-10     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5676061..5687059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMH93_RS25520 (LMH93_25520) argS 5677193..5678929 (+) 1737 WP_003249124.1 arginine--tRNA ligase -
  LMH93_RS25525 (LMH93_25525) - 5678931..5679629 (+) 699 WP_003249122.1 SPOR domain-containing protein -
  LMH93_RS25530 (LMH93_25530) - 5679721..5680140 (-) 420 WP_003249120.1 TM2 domain-containing protein -
  LMH93_RS25535 (LMH93_25535) - 5680307..5680933 (+) 627 WP_003249118.1 C40 family peptidase -
  LMH93_RS25540 (LMH93_25540) pilT 5681061..5682059 (-) 999 WP_098089513.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  LMH93_RS25545 (LMH93_25545) - 5682125..5682811 (+) 687 WP_004575484.1 YggS family pyridoxal phosphate-dependent enzyme -
  LMH93_RS25550 (LMH93_25550) proC 5682850..5683668 (+) 819 WP_004575483.1 pyrroline-5-carboxylate reductase -
  LMH93_RS25555 (LMH93_25555) - 5683679..5684269 (+) 591 WP_012053960.1 YggT family protein -
  LMH93_RS25560 (LMH93_25560) - 5684369..5685508 (+) 1140 WP_003249108.1 homoserine O-acetyltransferase -
  LMH93_RS25565 (LMH93_25565) metW 5685516..5686136 (+) 621 WP_003249106.1 methionine biosynthesis protein MetW -
  LMH93_RS25570 (LMH93_25570) - 5686159..5686593 (+) 435 WP_012053961.1 DUF4426 domain-containing protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 35972.68 Da        Isoelectric Point: 7.4825

>NTDB_id=627043 LMH93_RS25540 WP_098089513.1 5681061..5682059(-) (pilT) [Pseudomonas sp. CIP-10]
MDVTDLLARAVDAGASDLHLATGQIPMLRLDGELQRMGLPPLSQGALIEGMASVLDDDQRRQWAQGDEMDLALELPALGR
FRLNLFRQLNGPAVTFRLIPGRIATVSELDLADVFQAVAQCRDGLILVGGPTGSGKSSTLATLLDQLNRERALHIITLED
PVEVIHASQRSLVNQREMGRHSRGFAQGLRSALRQDPDVIMIGELRDLETIRLALRAAETGHLVLATVHARSATSSIDRL
VEVFAAEEKPLVRAMLAESLRLVVAQVLVRRVGGGRVAAREVLVATPAVRNLIREGRLAQLSSVMQGGAAEGMLTMEGAL
RRLRERGLIKGL

Nucleotide


Download         Length: 999 bp        

>NTDB_id=627043 LMH93_RS25540 WP_098089513.1 5681061..5682059(-) (pilT) [Pseudomonas sp. CIP-10]
ATGGATGTGACCGACCTGTTGGCCCGAGCTGTGGATGCGGGGGCTTCAGACCTGCACCTGGCGACGGGCCAGATTCCGAT
GCTGCGCCTGGATGGCGAGTTGCAGCGTATGGGCTTGCCGCCCTTGAGCCAGGGTGCCTTGATCGAGGGCATGGCGAGCG
TGCTGGATGACGACCAGCGCCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGCTTGGGCGC
TTTCGGCTGAACCTGTTTCGCCAGTTGAATGGCCCGGCGGTTACCTTTCGGTTGATTCCGGGGCGCATTGCGACGGTGAG
TGAGCTGGACCTTGCGGATGTGTTTCAAGCTGTTGCGCAATGCCGGGATGGCTTGATCCTCGTGGGCGGGCCGACCGGCA
GTGGCAAGTCCAGTACCCTGGCAACGCTACTCGACCAGCTGAACCGCGAGCGGGCGCTGCACATCATTACCCTGGAAGAC
CCTGTCGAGGTCATCCATGCCAGCCAGCGCAGCCTGGTCAACCAGCGTGAGATGGGGCGCCATAGTCGCGGCTTTGCTCA
GGGGCTGCGCAGTGCGCTGCGCCAGGACCCCGACGTGATCATGATCGGCGAGTTGCGCGACCTGGAAACCATTCGCCTGG
CCCTGCGCGCGGCCGAAACCGGGCACCTGGTGCTGGCAACCGTGCATGCGCGTTCGGCGACCAGCAGCATCGACAGGTTG
GTGGAGGTTTTTGCTGCCGAGGAAAAGCCGTTGGTGCGGGCGATGCTGGCCGAGTCGCTGCGCCTGGTGGTCGCGCAGGT
GCTGGTCAGGCGCGTGGGGGGTGGGCGGGTGGCTGCGCGGGAAGTGCTGGTGGCGACGCCGGCGGTGCGTAACCTGATTC
GGGAGGGGCGGTTGGCGCAGTTGTCTTCGGTGATGCAGGGCGGGGCGGCGGAGGGGATGCTGACGATGGAGGGGGCGTTG
CGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(112-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas aeruginosa PAK

51.368

99.096

0.509
  pilT Acinetobacter baumannii D1279779

50.76

99.096

0.503
  pilT Acinetobacter baumannii strain A118

50.76

99.096

0.503
  pilT Acinetobacter nosocomialis M2

50.76

99.096

0.503
  pilT Pseudomonas stutzeri DSM 10701

50.456

99.096

0.5
  pilT Acinetobacter baylyi ADP1

50.303

99.398

0.5
  pilT Neisseria meningitidis 8013

49.697

99.398

0.494
  pilT Neisseria gonorrhoeae MS11

49.394

99.398

0.491
  pilT Vibrio cholerae strain A1552

49.544

99.096

0.491
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.544

99.096

0.491
  pilT Legionella pneumophila strain ERS1305867

49.24

99.096

0.488
  pilT Legionella pneumophila strain Lp02

49.24

99.096

0.488
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.726

100

0.473
  pilU Pseudomonas stutzeri DSM 10701

38.182

99.398

0.38
  pilU Vibrio cholerae strain A1552

37.346

97.59

0.364