Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   LJU35_RS18420 Genome accession   NZ_CP085780
Coordinates   3815085..3816065 (-) Length   326 a.a.
NCBI ID   WP_032669250.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain 48411CZ     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3810085..3821065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJU35_RS18390 (LJU35_18390) - 3810963..3811460 (+) 498 WP_015571833.1 SprT family zinc-dependent metalloprotease -
  LJU35_RS18395 (LJU35_18395) endA 3811555..3812262 (+) 708 WP_045343971.1 deoxyribonuclease I -
  LJU35_RS18400 (LJU35_18400) rsmE 3812314..3813045 (+) 732 WP_045343973.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  LJU35_RS18405 (LJU35_18405) gshB 3813077..3814024 (+) 948 WP_015571835.1 glutathione synthase -
  LJU35_RS18410 (LJU35_18410) - 3814099..3814659 (+) 561 WP_006811924.1 YqgE/AlgH family protein -
  LJU35_RS18415 (LJU35_18415) ruvX 3814659..3815075 (+) 417 WP_006811925.1 Holliday junction resolvase RuvX -
  LJU35_RS18420 (LJU35_18420) pilT 3815085..3816065 (-) 981 WP_032669250.1 type IV pilus twitching motility protein PilT Machinery gene
  LJU35_RS18425 (LJU35_18425) - 3816083..3816784 (+) 702 WP_017382925.1 YggS family pyridoxal phosphate-dependent enzyme -
  LJU35_RS18430 (LJU35_18430) - 3816806..3817372 (+) 567 WP_045343976.1 YggT family protein -
  LJU35_RS18435 (LJU35_18435) yggU 3817369..3817665 (+) 297 WP_023304404.1 DUF167 family protein YggU -
  LJU35_RS18440 (LJU35_18440) - 3817669..3818262 (+) 594 WP_015571839.1 XTP/dITP diphosphatase -
  LJU35_RS18445 (LJU35_18445) hemW 3818255..3819403 (+) 1149 WP_045343978.1 radical SAM family heme chaperone HemW -
  LJU35_RS18450 (LJU35_18450) - 3819460..3819798 (+) 339 WP_045343980.1 endonuclease domain-containing protein -
  LJU35_RS18455 (LJU35_18455) - 3819882..3820598 (-) 717 WP_015571842.1 DUF2884 domain-containing protein -
  LJU35_RS18460 (LJU35_18460) - 3820656..3820982 (-) 327 WP_023304407.1 YggL family protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35691.71 Da        Isoelectric Point: 6.4131

>NTDB_id=619903 LJU35_RS18420 WP_032669250.1 3815085..3816065(-) (pilT) [Enterobacter hormaechei strain 48411CZ]
MDVEEIVALSVKHNVSDLHLCSDSPPRWRRSGRLEPAPFPPPDVEALLKAWLNDEQQGAWWANGQVDFAVTLAGRQRLRG
SAFKHMLGVSIALRLLPLTCPQLSALGVPRAIPELLSNDNGLILVTGATGSGKSTTLAAMVDFLNHHTDGHILTLEDPVE
FMYQSERCLIQQREIGQHSPSFAEALRSALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAIERLVDT
FPAQEKDPVRNQLAGSLRAVLAQKLRQDVQGGRVALYELLVNTSAAANLIREGKTWQLPGIIQTGQQAGMQNFEQSLAER
RAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=619903 LJU35_RS18420 WP_032669250.1 3815085..3816065(-) (pilT) [Enterobacter hormaechei strain 48411CZ]
ATGGATGTGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGTGATTCGCCACCGCG
CTGGCGCAGGTCAGGCCGTCTTGAACCTGCGCCGTTTCCGCCCCCGGATGTGGAGGCGTTATTAAAAGCGTGGCTCAACG
ACGAACAGCAGGGCGCATGGTGGGCAAACGGGCAAGTGGATTTTGCCGTTACCCTCGCAGGCCGTCAGCGGCTGCGCGGC
AGTGCGTTTAAGCATATGCTCGGCGTTTCGATTGCGCTGCGGCTGTTGCCGCTGACGTGCCCGCAGCTCTCTGCGCTAGG
TGTGCCGCGAGCGATCCCGGAACTACTGTCCAATGACAATGGCCTGATTCTGGTCACCGGCGCCACCGGCAGTGGGAAAT
CGACCACCCTGGCCGCTATGGTCGATTTCCTCAATCACCATACGGACGGGCATATTCTGACCCTGGAAGATCCGGTGGAG
TTTATGTACCAGAGCGAACGTTGCCTGATCCAGCAGCGGGAGATAGGCCAGCACAGCCCGTCCTTTGCCGAGGCGCTGCG
CAGCGCGCTGCGTGAAGATCCGGATGTGATTCTGCTTGGTGAGCTGCGCGACAGCGAGACGATACGCCTGGCGCTGACGG
CGGCGGAAACCGGCCATCTGGTGTTAGCCACGCTGCACACGCGCGGCGCGGCGCAGGCGATCGAGCGCCTGGTCGACACC
TTTCCGGCGCAGGAGAAAGATCCGGTGCGTAATCAGCTGGCGGGAAGCCTGCGTGCGGTCCTGGCGCAGAAGCTACGTCA
GGATGTCCAGGGCGGGCGCGTGGCGCTGTATGAGCTACTGGTGAATACCTCGGCGGCGGCAAACCTGATCCGCGAAGGCA
AAACCTGGCAACTGCCGGGCATTATTCAAACGGGGCAGCAGGCGGGAATGCAGAACTTTGAGCAGAGTCTGGCGGAGCGA
CGGGCGCAGGGGCGGCTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(108-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

50.765

100

0.509
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.765

100

0.509
  pilT Legionella pneumophila strain Lp02

48.758

98.773

0.482
  pilT Legionella pneumophila strain ERS1305867

48.758

98.773

0.482
  pilT Pseudomonas stutzeri DSM 10701

48.012

100

0.482
  pilT Neisseria meningitidis 8013

47.561

100

0.479
  pilT Neisseria gonorrhoeae MS11

47.256

100

0.475
  pilT Acinetobacter baumannii strain A118

47.095

100

0.472
  pilT Acinetobacter baylyi ADP1

47.095

100

0.472
  pilT Acinetobacter baumannii D1279779

47.095

100

0.472
  pilT Pseudomonas aeruginosa PAK

47.095

100

0.472
  pilT Acinetobacter nosocomialis M2

47.5

98.16

0.466
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.344

99.08

0.429
  pilU Pseudomonas stutzeri DSM 10701

38.182

100

0.387
  pilU Vibrio cholerae strain A1552

38.199

98.773

0.377