Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   LA756_RS26915 Genome accession   NZ_CP083740
Coordinates   6606278..6607378 (-) Length   366 a.a.
NCBI ID   WP_224437805.1    Uniprot ID   -
Organism   Bremerella sp. TYQ1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6601278..6612378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA756_RS26900 (LA756_26900) - 6601911..6602864 (-) 954 WP_224437802.1 type II secretion system protein -
  LA756_RS26905 (LA756_26905) - 6603025..6604419 (-) 1395 WP_224437803.1 type II secretion system F family protein -
  LA756_RS26910 (LA756_26910) - 6604494..6606218 (-) 1725 WP_224437804.1 GspE/PulE family protein -
  LA756_RS26915 (LA756_26915) pilT 6606278..6607378 (-) 1101 WP_224437805.1 type IV pilus twitching motility protein PilT Machinery gene
  LA756_RS26920 (LA756_26920) - 6607715..6609442 (-) 1728 WP_224437806.1 GspE/PulE family protein -
  LA756_RS26925 (LA756_26925) - 6609586..6610341 (-) 756 WP_224437807.1 hypothetical protein -
  LA756_RS26930 (LA756_26930) - 6610519..6611373 (+) 855 WP_224437808.1 porin family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 40358.17 Da        Isoelectric Point: 6.9272

>NTDB_id=607597 LA756_RS26915 WP_224437805.1 6606278..6607378(-) (pilT) [Bremerella sp. TYQ1]
MATILIDKLLQAAIKQGASDIHITVGQPPVFRLHGRMRQLDTKSLEPDDTVSLMKSITPERCQRELQETGGSDFGFAFSD
LARFRVSIFRQRGNISMVLRQIPNDMLTPEQLGLPAKVLELCHRPRGLFLVTGPTGSGKSTTLASVINHLNETIDHHIIT
IEDPIEFYHYHKKSTVNQREIGVDVPSFSEAIRRALRQDPDVILVGEMRDLETIEAAISAAETGHVVFGTLHTNSAASTV
DRIIDVFPAGQQDQIRTQLGSALLGVLAQTLCPKIGGGRCAAYELLNVTSGISNLIRENKTFRIPSMIQTGSKHGMILMD
DSLFNHWRAERVTMEDALAKAQNPNDLAKRIADARRGIVEDREGAA

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=607597 LA756_RS26915 WP_224437805.1 6606278..6607378(-) (pilT) [Bremerella sp. TYQ1]
ATGGCCACGATTCTGATTGACAAATTGTTACAGGCCGCCATCAAACAAGGCGCGAGCGATATTCATATAACCGTGGGACA
GCCCCCCGTGTTTCGCTTGCATGGTCGAATGCGTCAATTGGATACCAAATCGCTGGAACCTGACGACACTGTTTCGCTGA
TGAAAAGCATCACGCCGGAACGGTGCCAACGCGAATTGCAAGAAACAGGCGGTTCCGACTTTGGTTTTGCGTTTTCGGAC
TTGGCTCGTTTCCGTGTGTCGATTTTCCGACAGCGTGGAAACATCTCGATGGTCTTGCGTCAGATTCCAAACGACATGCT
CACCCCCGAGCAGTTGGGTCTGCCGGCGAAAGTGCTGGAGCTTTGCCATCGGCCGCGTGGGTTGTTCCTCGTCACTGGAC
CGACCGGTTCTGGTAAGTCGACCACGCTTGCCTCGGTGATCAACCACCTCAACGAAACCATCGACCACCATATCATCACG
ATCGAAGACCCGATCGAATTTTATCACTACCACAAAAAGTCGACCGTCAACCAACGTGAAATCGGCGTTGACGTGCCGTC
GTTCTCGGAAGCCATTCGACGTGCGTTGCGTCAGGACCCTGACGTGATCCTCGTGGGTGAAATGCGAGACTTGGAGACGA
TTGAAGCTGCTATTTCGGCGGCGGAAACAGGGCACGTTGTGTTCGGTACGCTGCATACCAATAGCGCGGCAAGTACCGTC
GACCGTATTATCGACGTGTTCCCGGCCGGCCAACAGGATCAGATTCGTACCCAGCTCGGCTCGGCACTGCTGGGCGTGTT
GGCTCAGACGCTGTGCCCCAAAATCGGTGGCGGACGCTGTGCTGCCTACGAGTTGCTGAACGTCACCTCAGGTATCTCCA
ACCTGATTCGTGAAAACAAAACATTCCGTATTCCATCGATGATTCAAACCGGCTCGAAGCACGGGATGATTCTGATGGAC
GACTCCTTATTCAATCATTGGCGTGCCGAACGTGTCACCATGGAAGACGCGTTGGCCAAAGCCCAAAATCCCAACGACCT
GGCAAAACGTATCGCCGACGCGCGACGCGGTATTGTCGAAGACCGTGAAGGCGCCGCATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.811

98.087

0.508
  pilT Pseudomonas aeruginosa PAK

49.123

93.443

0.459
  pilT Acinetobacter baylyi ADP1

48.378

92.623

0.448
  pilT Pseudomonas stutzeri DSM 10701

47.953

93.443

0.448
  pilT Acinetobacter nosocomialis M2

51.258

86.885

0.445
  pilT Acinetobacter baumannii D1279779

51.258

86.885

0.445
  pilT Acinetobacter baumannii strain A118

51.258

86.885

0.445
  pilT Neisseria meningitidis 8013

46.512

93.989

0.437
  pilT Legionella pneumophila strain Lp02

50.314

86.885

0.437
  pilT Legionella pneumophila strain ERS1305867

50.314

86.885

0.437
  pilT Neisseria gonorrhoeae MS11

46.221

93.989

0.434
  pilT Vibrio cholerae strain A1552

48.265

86.612

0.418
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.265

86.612

0.418
  pilU Acinetobacter baylyi ADP1

39.655

95.082

0.377
  pilU Pseudomonas stutzeri DSM 10701

39.942

93.716

0.374