Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   K6J62_RS03585 Genome accession   NZ_AP018779
Coordinates   709312..710319 (+) Length   335 a.a.
NCBI ID   WP_110431704.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-8 isolate 10H15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 704312..715319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J62_RS03560 (CHBNIII8_06740) aspS 704995..706761 (+) 1767 WP_101160690.1 aspartate--tRNA ligase -
  K6J62_RS03565 (CHBNIII8_06750) nudB 706783..707256 (+) 474 WP_162627954.1 dihydroneopterin triphosphate diphosphatase -
  K6J62_RS03570 (CHBNIII8_06760) - 707268..708008 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  K6J62_RS03575 (CHBNIII8_06770) ruvC 708055..708627 (+) 573 WP_005666663.1 crossover junction endodeoxyribonuclease RuvC -
  K6J62_RS03580 (CHBNIII8_06780) ruvA 708690..709304 (+) 615 WP_005659994.1 Holliday junction branch migration protein RuvA Machinery gene
  K6J62_RS03585 (CHBNIII8_06790) ruvB 709312..710319 (+) 1008 WP_110431704.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  K6J62_RS03590 (CHBNIII8_06800) - 710371..710658 (-) 288 WP_005656308.1 DUF5339 domain-containing protein -
  K6J62_RS03595 (CHBNIII8_06810) xerD 710831..711724 (-) 894 WP_105897889.1 site-specific tyrosine recombinase XerD -
  K6J62_RS03600 (CHBNIII8_06820) - 711754..712920 (-) 1167 WP_005660002.1 3-phenylpropionate MFS transporter -
  K6J62_RS03605 (CHBNIII8_06830) proC 712920..713735 (-) 816 WP_110431705.1 pyrroline-5-carboxylate reductase -
  K6J62_RS03610 (CHBNIII8_06840) - 714396..715286 (+) 891 WP_005649010.1 replication initiation protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37076.46 Da        Isoelectric Point: 4.8547

>NTDB_id=60048 K6J62_RS03585 WP_110431704.1 709312..710319(+) (ruvB) [Haemophilus influenzae strain CHBN-III-8 isolate 10H15]
MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
IISINVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSKTYRHFGLQKLSD

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=60048 K6J62_RS03585 WP_110431704.1 709312..710319(+) (ruvB) [Haemophilus influenzae strain CHBN-III-8 isolate 10H15]
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGGTTGATGAAGATGTTATCGACCGTGCTATTCGTCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTACGCGAGCAGATGGATATTTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCAGGTTTGGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACATCAGGGCCTGTATTAGAAAAAGCGGGAGATTTAGCCGCAATGCTAACCAATCTTGAACCGCA
TGATGTATTATTTATTGATGAAATCCATCGACTTTCCCCTGCGATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGCGAAGGACCCGCTGCTCGTTCCATTAAATTAGATTTGCCACCTTTTACTTTGGTTGGTGCG
ACCACTAGAGCGGGTTCTTTGACTTCGCCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAGTTTTATTCTGTAGA
AGATTTAACATCTATCGTTGCAAGAAGTGCGGACTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTCGAGGTGGCTC
GTCGTTCACGAGGCACGCCTCGAATTGCAAACCGTTTATTACGACGCGTGCGTGATTATGCAGATGTACGTAATGGCGGT
ATTATTTCTATAAATGTGGCAAAACAAGCGCTTTCAATGCTAGATGTAGACGATGCAGGATTTGATTATTTGGATAGAAA
ATTGTTGTCTGCAGTTATTGAGCGTTTTGATGGAGGCCCTGTGGGACTAGATAATCTTGCTGCTGCAATTGGCGAAGAAC
GTGATACCATTGAAGATGTGTTAGAGCCTTATTTGATTCAACAGGGGTTTCTACAAAGAACGCCGCGTGGTCGTATTGCA
ACATCGAAAACTTATCGCCATTTCGGTCTGCAGAAATTATCAGACTAG

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.385

97.612

0.609
  ruvB Streptococcus pneumoniae TIGR4

58.282

97.313

0.567
  ruvB Streptococcus pneumoniae R6

58.282

97.313

0.567
  ruvB Streptococcus pneumoniae D39

58.282

97.313

0.567
  ruvB Helicobacter pylori 26695

54.952

93.433

0.513
  ruvB Synechocystis sp. PCC 6803

55.016

92.239

0.507

Multiple sequence alignment