Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   KX724_RS16550 Genome accession   NZ_CP079106
Coordinates   3625250..3625669 (-) Length   139 a.a.
NCBI ID   WP_059064909.1    Uniprot ID   -
Organism   Stenotrophomonas indicatrix strain D763     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3620250..3630669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX724_RS16535 (KX724_16535) pilR 3621004..3622377 (+) 1374 WP_025874296.1 sigma-54 dependent transcriptional regulator Regulator
  KX724_RS16540 (KX724_16540) pilB 3622780..3624507 (-) 1728 WP_099785196.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KX724_RS16545 (KX724_16545) - 3624728..3625198 (-) 471 WP_306431525.1 pilin -
  KX724_RS16550 (KX724_16550) pilA/pilAI 3625250..3625669 (-) 420 WP_059064909.1 pilin Machinery gene
  KX724_RS16555 (KX724_16555) pilC 3626024..3627283 (+) 1260 WP_059064911.1 type II secretion system F family protein Machinery gene
  KX724_RS16560 (KX724_16560) - 3627291..3628154 (+) 864 WP_025874291.1 A24 family peptidase -
  KX724_RS16565 (KX724_16565) coaE 3628166..3628777 (+) 612 WP_032975178.1 dephospho-CoA kinase -
  KX724_RS16570 (KX724_16570) - 3628830..3629216 (-) 387 WP_218787888.1 hypothetical protein -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 14542.80 Da        Isoelectric Point: 8.1004

>NTDB_id=587807 KX724_RS16550 WP_059064909.1 3625250..3625669(-) (pilA/pilAI) [Stenotrophomonas indicatrix strain D763]
MKNQKGFTLIELMIVVAIIAILAAIALPMYQDYVAKSQVTAALAEVTPGKTQFEIFVNEGKADADFTATKLGLPAAPTTR
CTSFTITAGAEGSIACTSIKGSPKAAGNITWKRAADGTWTCNTTVADDKYYPVGCTKGA

Nucleotide


Download         Length: 420 bp        

>NTDB_id=587807 KX724_RS16550 WP_059064909.1 3625250..3625669(-) (pilA/pilAI) [Stenotrophomonas indicatrix strain D763]
ATGAAGAACCAGAAGGGCTTCACCCTTATCGAACTGATGATCGTCGTTGCGATCATCGCCATCCTGGCCGCCATCGCCCT
GCCGATGTACCAGGACTATGTGGCTAAGTCGCAGGTCACCGCTGCACTTGCCGAAGTCACCCCTGGCAAGACGCAGTTCG
AGATCTTCGTGAACGAAGGCAAGGCTGATGCCGACTTCACCGCGACCAAGCTGGGCCTGCCGGCTGCACCGACCACCCGC
TGCACCAGCTTCACGATCACTGCCGGTGCCGAAGGTTCCATCGCCTGCACCTCCATTAAGGGCAGCCCGAAGGCGGCTGG
CAATATCACTTGGAAGCGTGCCGCTGATGGTACTTGGACCTGCAACACCACCGTTGCTGATGACAAGTACTACCCGGTTG
GCTGCACCAAGGGTGCCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

51.471

97.842

0.504
  pilA Acinetobacter baumannii strain A118

48.252

100

0.496
  pilA Pseudomonas aeruginosa PAK

45.695

100

0.496
  pilA/pilAII Pseudomonas stutzeri DSM 10701

45.926

97.122

0.446
  pilA Vibrio cholerae strain A1552

41.216

100

0.439
  pilA Vibrio cholerae C6706

41.216

100

0.439
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

41.216

100

0.439
  comP Acinetobacter baylyi ADP1

40.816

100

0.432
  pilA Ralstonia pseudosolanacearum GMI1000

34.969

100

0.41
  pilA2 Legionella pneumophila str. Paris

41.045

96.403

0.396
  pilA2 Legionella pneumophila strain ERS1305867

41.045

96.403

0.396
  pilE Neisseria gonorrhoeae MS11

38.129

100

0.381