Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KX724_RS16555 Genome accession   NZ_CP079106
Coordinates   3626024..3627283 (+) Length   419 a.a.
NCBI ID   WP_059064911.1    Uniprot ID   -
Organism   Stenotrophomonas indicatrix strain D763     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3621024..3632283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX724_RS16540 (KX724_16540) pilB 3622780..3624507 (-) 1728 WP_099785196.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KX724_RS16545 (KX724_16545) - 3624728..3625198 (-) 471 WP_306431525.1 pilin -
  KX724_RS16550 (KX724_16550) pilA/pilAI 3625250..3625669 (-) 420 WP_059064909.1 pilin Machinery gene
  KX724_RS16555 (KX724_16555) pilC 3626024..3627283 (+) 1260 WP_059064911.1 type II secretion system F family protein Machinery gene
  KX724_RS16560 (KX724_16560) - 3627291..3628154 (+) 864 WP_025874291.1 A24 family peptidase -
  KX724_RS16565 (KX724_16565) coaE 3628166..3628777 (+) 612 WP_032975178.1 dephospho-CoA kinase -
  KX724_RS16570 (KX724_16570) - 3628830..3629216 (-) 387 WP_218787888.1 hypothetical protein -
  KX724_RS16575 (KX724_16575) - 3629729..3631099 (-) 1371 WP_080150572.1 HAMP domain-containing sensor histidine kinase -
  KX724_RS16580 (KX724_16580) - 3631062..3631739 (-) 678 WP_025874286.1 response regulator transcription factor -
  KX724_RS16585 (KX724_16585) - 3631748..3632221 (-) 474 WP_025874285.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45739.24 Da        Isoelectric Point: 10.1706

>NTDB_id=587808 KX724_RS16555 WP_059064911.1 3626024..3627283(+) (pilC) [Stenotrophomonas indicatrix strain D763]
MSVSRNAIKKEPVARSTTELQPFVWMGTDKRGVKMKGEQVAKNANLLRAELRRQGINPGMVKPKPKPLFGAAGSRITPKD
VAFFSRQMATMMKSGVPIVGALDIIASGHKNPRMKKMVDSVRTDIEGGSSLYEAVSKHPVQFDELYRNLVKAGEGAGVLE
TVLDTVATYKENIEALKGKIKKAMFYPAMVLAVALLVSGILLVWVVPQFEDVFKGFGAELPAFTQMIVSLSRFMVSWWWL
ILILIIGSIVGFIAAYKRSPKLQHFMDRLVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMAMKQTALFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPIIMVIIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=587808 KX724_RS16555 WP_059064911.1 3626024..3627283(+) (pilC) [Stenotrophomonas indicatrix strain D763]
ATGTCTGTCAGTCGCAATGCGATCAAGAAGGAGCCCGTGGCGCGTAGCACCACGGAGCTGCAGCCGTTTGTCTGGATGGG
GACCGACAAACGGGGAGTCAAGATGAAAGGCGAGCAGGTCGCAAAAAACGCGAACCTGCTGAGAGCTGAGCTACGCCGCC
AGGGTATCAACCCAGGCATGGTCAAGCCCAAGCCAAAACCATTGTTCGGTGCCGCCGGCAGCAGGATCACGCCAAAGGAC
GTCGCGTTCTTCAGCCGGCAGATGGCCACCATGATGAAGTCAGGCGTGCCGATCGTCGGCGCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGCATGAAAAAGATGGTGGATTCAGTCCGAACCGATATCGAGGGCGGCTCGTCGCTGTACGAGG
CTGTCAGCAAACATCCGGTGCAGTTCGACGAGCTCTATCGTAATCTGGTCAAGGCAGGCGAAGGCGCCGGTGTACTGGAG
ACGGTGCTGGACACCGTCGCCACCTACAAAGAGAACATCGAAGCCCTGAAGGGCAAGATCAAGAAGGCGATGTTCTACCC
AGCTATGGTGCTGGCGGTTGCGCTGCTGGTCAGTGGCATCCTGCTTGTCTGGGTGGTACCGCAGTTCGAGGACGTGTTCA
AGGGATTCGGTGCTGAGCTCCCTGCGTTCACCCAGATGATCGTCAGTCTATCCAGATTCATGGTGTCATGGTGGTGGCTG
ATATTGATCTTAATCATCGGCTCAATTGTCGGCTTCATTGCAGCCTACAAGCGATCACCGAAACTGCAGCACTTTATGGA
CAGATTGGTTCTAAAGGTGCCGGTGATTGGACAAATCATGCATAACAGCGCTATTGCCCGTTTCTCGCGCACCACGGCGG
TCACTTTCAAGGCCGGTGTGCCATTGGTGGAAGCCCTGGGCATTGTTGCAGGCGCCACCGGCAATACGGTGTATGAGGAA
GCAGTCCTGCGCATGCGCGACGACGTTTCGGTCGGTTACCCGGTCAATATGGCCATGAAGCAAACCGCCCTGTTCCCGCA
CATGGTCATCCAGATGACCGGTATCGGCGAAGAGGCAGGTGCCCTGGATGCCATGCTGTTCAAAGTGGCCGAGTACTATG
AGCAAGAGGTCAACAATGCCGTTGACGCCCTGAGCAGCCTGCTGGAACCGATCATCATGGTGATCATTGGTACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTGCCGATTTTCAAGCTCGCTTCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.228

96.42

0.504
  pilC Pseudomonas stutzeri DSM 10701

53.283

94.511

0.504
  pilC Acinetobacter baylyi ADP1

50.493

96.897

0.489
  pilC Acinetobacter baumannii D1279779

50.63

94.749

0.48
  pilG Neisseria gonorrhoeae MS11

44

95.465

0.42
  pilG Neisseria meningitidis 44/76-A

43.392

95.704

0.415
  pilC Vibrio cholerae strain A1552

41.626

96.897

0.403
  pilC Vibrio campbellii strain DS40M4

40.399

95.704

0.387