Detailed information NTG0587805

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: KX724_RS16535
• Genome accession: NZ_CP079106
• Coordinates: 3621004..3622377 (+)
• Length: 457 a.a.
• NCBI ID: WP_025874296.1
• Uniprot ID: A0AA43HP51
• Organism: Stenotrophomonas indicatrix strain D763
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3616004..3627377

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KX724_RS16520 (KX724_16520)	sucD	3616893..3617768 (-)	876	WP_017356169.1	succinate--CoA ligase subunit alpha	-
KX724_RS16525 (KX724_16525)	sucC	3617790..3618959 (-)	1170	WP_025874298.1	ADP-forming succinate--CoA ligase subunit beta	-
KX724_RS16530 (KX724_16530)	-	3619336..3620949 (+)	1614	WP_218787887.1	ATP-binding protein	-
KX724_RS16535 (KX724_16535)	pilR	3621004..3622377 (+)	1374	WP_025874296.1	sigma-54 dependent transcriptional regulator	Regulator
KX724_RS16540 (KX724_16540)	pilB	3622780..3624507 (-)	1728	WP_099785196.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KX724_RS16545 (KX724_16545)	-	3624728..3625198 (-)	471	WP_306431525.1	pilin	-
KX724_RS16550 (KX724_16550)	pilA/pilAI	3625250..3625669 (-)	420	WP_059064909.1	pilin	Machinery gene
KX724_RS16555 (KX724_16555)	pilC	3626024..3627283 (+)	1260	WP_059064911.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49638.94 Da
• Isoelectric Point: 6.6449

>NTDB_id=587805 KX724_RS16535 WP_025874296.1 3621004..3622377(+) (pilR) [Stenotrophomonas indicatrix strain D763]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDITVLRGLVKHALELNNSERPVAGPAAEQAARLLGESPAMDVLRATIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPTELMESEFFGHRKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAPSEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPA
LAASILARLARSHGRATPLLAPSALDALAQYGFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRSPGSAAHAEAV
VDLHPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=587805 KX724_RS16535 WP_025874296.1 3621004..3622377(+) (pilR) [Stenotrophomonas indicatrix strain D763]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGATATCCGCGAACTGCTGGTGTTGACCCTCGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCCAGCAATCCCTATGACCTGTGCATCA
CCGACATGCGTCTGCCCGATGGCAATGGCATCGAACTGGTCAGCGAGATCGCCCAGCACTATCCGCGCACGCCCGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGTGCCTTCGATTTCGTCAGCAAGCCGGT
GGACATCACCGTGCTCCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACAGCGAACGCCCCGTTGCCGGCCCCGCCG
CCGAACAGGCCGCACGCCTGCTCGGCGAATCGCCGGCGATGGACGTGCTGCGCGCCACCATCGGCAAGGTTGCGCGCAGC
CAGGCGCCGGTCTACATCCTGGGCGAATCCGGGGTGGGCAAGGAACTGGTTGCACGCACCATCCACGCACAGGGTGCACG
CGCCGCTGGGCCGTTCGTGCCGGTCAACTGTGGCGCCATTCCCACCGAGTTGATGGAGAGCGAGTTCTTCGGCCATCGCA
AGGGCAGCTTCACCGGCGCCCATGCCGACAAGCCGGGACTGTTCCAGGCCGCACACGGCGGCACCCTGTTCCTGGATGAG
GTGGCCGAGCTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGTGCGATCCAGGAAAAATCGGTGCGCGCGGTGGGCGCCCC
CAGCGAAGAGCCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGATCTGGCCGAGCTGGTCGAAGACGGGCGCTTCC
GCCACGACCTCTACTACCGCATCAATGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGTCGCCAGGACCTGCCCGCA
CTGGCCGCGTCGATCCTGGCGCGGCTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCGCCGTCGGCGCTGGACGC
GTTGGCCCAGTACGGCTTCCCCGGCAACGTGCGCGAGCTGGAGAACATCCTGGAGCGCGCGCTGGCACTGGCCGAGGAAG
ACCGTATCGGCGCCGACGACCTGCGCCTGCCGCAGCATGCCCCTCGCTCACCGGGCAGCGCTGCGCACGCTGAAGCCGTA
GTCGATCTGCACCCGGGCAGTGCCGCCCTGCCCTCGTATATCGAGCAGCTCGAGCGCAGTGCCATCCAGCGCGCGCTGGA
AGAAAACCGCTGGAACAAGACCCGCACCGCCGCGCAGCTGGGCATTACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAATAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

• Response regulator receiver domain (Response_reg) (8-114)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.596	99.781	0.635
pilR	Acinetobacter baumannii strain A118	48.38	100	0.49