Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   DAX88_RS04610 Genome accession   NZ_CP077710
Coordinates   931628..932608 (+) Length   326 a.a.
NCBI ID   WP_023247106.1    Uniprot ID   A0A8E9YEH3
Organism   Salmonella enterica subsp. enterica strain CFSAN058540     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 926628..937608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAX88_RS04580 (DAX88_004580) ansB 927142..928188 (+) 1047 WP_023247102.1 L-asparaginase 2 -
  DAX88_RS04585 (DAX88_004585) hemW 928304..929440 (-) 1137 WP_023247103.1 radical SAM family heme chaperone HemW -
  DAX88_RS04590 (DAX88_004590) - 929433..930026 (-) 594 WP_001174766.1 XTP/dITP diphosphatase -
  DAX88_RS04595 (DAX88_004595) yggU 930034..930324 (-) 291 WP_023247104.1 DUF167 family protein YggU -
  DAX88_RS04600 (DAX88_004600) - 930321..930887 (-) 567 WP_001094848.1 YggT family protein -
  DAX88_RS04605 (DAX88_004605) - 930906..931610 (-) 705 WP_023247105.1 YggS family pyridoxal phosphate-dependent enzyme -
  DAX88_RS04610 (DAX88_004610) pilT 931628..932608 (+) 981 WP_023247106.1 type IV pilus twitching motility protein PilT Machinery gene
  DAX88_RS04615 (DAX88_004615) - 932740..933426 (+) 687 WP_023247107.1 IclR family transcriptional regulator -
  DAX88_RS04620 (DAX88_004620) ruvX 933474..933890 (-) 417 WP_023247108.1 Holliday junction resolvase RuvX -
  DAX88_RS04625 (DAX88_004625) - 933890..934453 (-) 564 WP_053508147.1 YqgE/AlgH family protein -
  DAX88_RS04630 (DAX88_004630) gshB 934669..935616 (-) 948 WP_053508145.1 glutathione synthase -
  DAX88_RS04635 (DAX88_004635) rsmE 935636..936367 (-) 732 WP_023247111.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  DAX88_RS04640 (DAX88_004640) endA 936443..937150 (-) 708 WP_023247112.1 deoxyribonuclease I -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36113.30 Da        Isoelectric Point: 7.5388

>NTDB_id=582457 DAX88_RS04610 WP_023247106.1 931628..932608(+) (pilT) [Salmonella enterica subsp. enterica strain CFSAN058540]
MNMEEIVTLSVKHNVSDLHLCNAWPARWRKQGRMEIAPFTAPDVDRLLLDWLNDAQQYQWRTHGQLDFAVSLAGTRRLRA
SAFTHQQGTSLALRLLPERCPDLAEIQTPPIVPALLASENGLILVTGATGSGKSTTLAAMVGYLNQHADKHILTLEDPIE
YRYASKRCLIQQREINQHCATFAAGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKEPVRGQLAGSLRAVLSQKLEPDRQDGRVALFELLINTPATGNLIREGKLHQLAHVIQTGQQQGMMTFAQSAQWR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=582457 DAX88_RS04610 WP_023247106.1 931628..932608(+) (pilT) [Salmonella enterica subsp. enterica strain CFSAN058540]
ATGAATATGGAAGAAATTGTGACGCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGTAACGCCTGGCCTGCGCG
ATGGCGCAAACAAGGACGGATGGAGATCGCGCCTTTTACTGCGCCTGATGTCGACAGGCTTCTGCTTGATTGGCTTAATG
ACGCGCAACAATATCAGTGGCGAACGCACGGCCAGCTTGATTTCGCCGTTTCGCTGGCCGGTACGCGGCGCCTGCGCGCC
AGTGCGTTCACACATCAACAGGGAACGTCGCTGGCGCTACGGCTCTTGCCCGAGCGTTGTCCTGATCTGGCGGAAATCCA
GACGCCGCCGATAGTACCAGCACTGCTTGCCAGTGAGAACGGACTGATTCTGGTCACTGGCGCCACTGGCAGCGGGAAAT
CCACCACGCTGGCGGCGATGGTGGGGTATCTTAATCAACATGCCGATAAACATATTCTGACGCTGGAAGATCCTATTGAG
TACCGTTACGCCAGCAAGCGTTGCCTGATACAGCAGCGGGAGATCAACCAGCATTGCGCTACTTTCGCCGCCGGGCTGCG
CGCGGCGTTGCGTGAAGATCCCGATGTCATTTTGCTGGGAGAGTTGCGTGACAGCGAAACCATTCGCCTGGCGCTGACAG
CGGCGGAAACGGGACATCTGGTACTGGCAACCCTGCATACTCGCGGCGCGGCGCAGGCGGTGGAAAGATTGGTGGATAGT
TTTCCGGCGCAGGAAAAAGAACCGGTACGTGGCCAACTGGCGGGCAGCCTGCGCGCCGTACTATCGCAAAAACTGGAGCC
TGACAGGCAGGATGGGCGCGTGGCGTTGTTTGAATTACTGATTAATACGCCAGCCACAGGGAATTTGATCCGAGAAGGTA
AACTCCATCAGTTGGCCCACGTGATACAAACCGGGCAGCAGCAGGGGATGATGACGTTCGCCCAGAGCGCGCAATGGCGT
CAGGCGCAGGGACGGCTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(77-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

48.93

100

0.491
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.93

100

0.491
  pilT Neisseria meningitidis 8013

47.561

100

0.479
  pilT Neisseria gonorrhoeae MS11

47.256

100

0.475
  pilT Acinetobacter baumannii strain A118

45.566

100

0.457
  pilT Acinetobacter baumannii D1279779

45.566

100

0.457
  pilT Acinetobacter baylyi ADP1

45.566

100

0.457
  pilT Pseudomonas aeruginosa PAK

45.26

100

0.454
  pilT Acinetobacter nosocomialis M2

45.26

100

0.454
  pilT Pseudomonas stutzeri DSM 10701

44.954

100

0.451
  pilT Legionella pneumophila strain Lp02

45.283

97.546

0.442
  pilT Legionella pneumophila strain ERS1305867

45.283

97.546

0.442
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

38.871

97.853

0.38
  pilU Pseudomonas stutzeri DSM 10701

36.145

100

0.368