Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   DBO17_RS03715 Genome accession   NZ_CP077704
Coordinates   773031..774011 (+) Length   326 a.a.
NCBI ID   WP_108408307.1    Uniprot ID   -
Organism   Salmonella enterica subsp. enterica strain CFSAN058565     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 768031..779011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBO17_RS03685 (DBO17_003685) - 768608..769615 (+) 1008 WP_000252197.1 DUF1202 domain-containing protein -
  DBO17_RS03690 (DBO17_003690) hemW 769707..770843 (-) 1137 WP_079845545.1 radical SAM family heme chaperone HemW -
  DBO17_RS03695 (DBO17_003695) - 770836..771429 (-) 594 WP_001174769.1 XTP/dITP diphosphatase -
  DBO17_RS03700 (DBO17_003700) yggU 771437..771727 (-) 291 WP_001277205.1 DUF167 family protein YggU -
  DBO17_RS03705 (DBO17_003705) - 771724..772290 (-) 567 WP_001094848.1 YggT family protein -
  DBO17_RS03710 (DBO17_003710) - 772309..773013 (-) 705 WP_079960376.1 YggS family pyridoxal phosphate-dependent enzyme -
  DBO17_RS03715 (DBO17_003715) pilT 773031..774011 (+) 981 WP_108408307.1 type IV pilus twitching motility protein PilT Machinery gene
  DBO17_RS03720 (DBO17_003720) - 774144..774830 (+) 687 WP_079959843.1 IclR family transcriptional regulator -
  DBO17_RS03725 (DBO17_003725) ruvX 774877..775293 (-) 417 WP_079959844.1 Holliday junction resolvase RuvX -
  DBO17_RS03730 (DBO17_003730) - 775293..775856 (-) 564 WP_001053167.1 YqgE/AlgH family protein -
  DBO17_RS03735 (DBO17_003735) gshB 776072..777019 (-) 948 WP_000593248.1 glutathione synthase -
  DBO17_RS03740 (DBO17_003740) rsmE 777039..777770 (-) 732 WP_023203985.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  DBO17_RS03745 (DBO17_003745) endA 777847..778554 (-) 708 WP_000286133.1 deoxyribonuclease I -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36123.31 Da        Isoelectric Point: 7.5355

>NTDB_id=582412 DBO17_RS03715 WP_108408307.1 773031..774011(+) (pilT) [Salmonella enterica subsp. enterica strain CFSAN058565]
MNMEEIVTLSVKHNVSDLHLCNAWPARWRKQGRMENAPFTAPDVDRLLLDWLNDAQQYQWRAHGQLDFAVSLSGTRRLRA
SAFTHQQGTSLALRLLPERCPDLAEIQTPPIVPALLASENGLILVTGATGCGKSTTLAAMVGHLNQHADKHILTLEDPIE
YRYTSKRCLIQQREIGQHCATFAAGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKEPVRSQLAGSLRAVLSQKLEVDRQDGRVALFELLINTPATGNLIREGKLHQLAHVIQTGQQQGMMTFAQSAQWR
QVQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=582412 DBO17_RS03715 WP_108408307.1 773031..774011(+) (pilT) [Salmonella enterica subsp. enterica strain CFSAN058565]
ATGAATATGGAAGAAATTGTGACGCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGTAACGCCTGGCCTGCGCG
ATGGCGCAAACAAGGACGCATGGAGAACGCGCCTTTTACCGCGCCTGATGTCGACAGGCTTCTGCTTGATTGGCTTAATG
ATGCGCAACAATATCAGTGGCGAGCGCACGGCCAGCTTGATTTCGCCGTCTCGCTGTCTGGCACGCGGCGCCTGCGCGCC
AGTGCGTTCACACATCAACAGGGAACGTCGCTGGCGCTACGGCTATTGCCCGAGCGTTGTCCTGATCTGGCGGAAATCCA
GACGCCGCCGATAGTACCCGCACTGCTTGCCAGCGAGAACGGACTGATTCTGGTCACTGGCGCTACTGGCTGCGGGAAAT
CCACTACGCTGGCGGCGATGGTGGGACATCTTAATCAACATGCCGATAAACACATCCTGACGCTGGAAGATCCTATTGAG
TACCGTTACACCAGCAAGCGTTGCCTGATACAGCAGCGGGAAATCGGCCAGCATTGCGCCACTTTTGCCGCCGGGCTGCG
CGCGGCGTTACGTGAAGATCCCGATGTCATTTTACTGGGAGAGCTGCGTGACAGCGAGACCATTCGCCTGGCGCTGACGG
CGGCGGAAACGGGGCATCTGGTACTGGCAACCCTGCATACTCGCGGTGCGGCGCAGGCGGTGGAAAGATTAGTGGATAGT
TTTCCGGCGCAGGAAAAAGAACCGGTACGCAGCCAACTGGCGGGTAGTCTGCGCGCCGTACTATCACAAAAACTGGAGGT
CGACAGACAGGATGGGCGCGTGGCGTTGTTTGAATTACTGATTAATACGCCAGCCACAGGGAATTTGATCCGTGAAGGCA
AACTCCATCAGTTGGCCCACGTGATACAAACCGGGCAGCAGCAGGGGATGATGACATTCGCCCAGAGCGCGCAATGGCGT
CAGGTGCAGGGACGGCTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(77-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

48.318

100

0.485
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.318

100

0.485
  pilT Neisseria meningitidis 8013

47.866

100

0.482
  pilT Neisseria gonorrhoeae MS11

47.561

100

0.479
  pilT Acinetobacter baumannii strain A118

45.26

100

0.454
  pilT Acinetobacter baumannii D1279779

45.26

100

0.454
  pilT Acinetobacter nosocomialis M2

46.082

97.853

0.451
  pilT Acinetobacter baylyi ADP1

44.954

100

0.451
  pilT Pseudomonas stutzeri DSM 10701

45.886

96.933

0.445
  pilT Pseudomonas aeruginosa PAK

45.886

96.933

0.445
  pilT Legionella pneumophila strain ERS1305867

44.654

97.546

0.436
  pilT Legionella pneumophila strain Lp02

44.654

97.546

0.436
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

38.558

97.853

0.377
  pilU Pseudomonas stutzeri DSM 10701

36.556

100

0.371