Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | KIK02_RS17450 | Genome accession | NZ_CP075171 |
| Coordinates | 3748237..3749352 (-) | Length | 371 a.a. |
| NCBI ID | WP_233743848.1 | Uniprot ID | - |
| Organism | Leptodesmis sichuanensis A121 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3743237..3754352
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KIK02_RS17435 (KIK02_17575) | - | 3743668..3746265 (+) | 2598 | WP_233743845.1 | CHASE2 domain-containing protein | - |
| KIK02_RS17440 (KIK02_17580) | - | 3746270..3746878 (-) | 609 | WP_233743846.1 | hypothetical protein | - |
| KIK02_RS17445 (KIK02_17585) | - | 3746897..3748123 (-) | 1227 | WP_233743847.1 | type II secretion system F family protein | - |
| KIK02_RS17450 (KIK02_17590) | pilT | 3748237..3749352 (-) | 1116 | WP_233743848.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| KIK02_RS17455 (KIK02_17595) | pilB/pilB1 | 3749532..3751529 (-) | 1998 | WP_233743849.1 | GspE/PulE family protein | Machinery gene |
| KIK02_RS17460 (KIK02_17600) | grpE | 3751998..3752741 (+) | 744 | WP_233743850.1 | nucleotide exchange factor GrpE | - |
Sequence
Protein
Download Length: 371 a.a. Molecular weight: 40777.01 Da Isoelectric Point: 6.5071
>NTDB_id=568209 KIK02_RS17450 WP_233743848.1 3748237..3749352(-) (pilT) [Leptodesmis sichuanensis A121]
MELMIEDLMEQLIEMGGSDLHLTAGLPPYFRISGKLQPIGDEALTAEECQRLIFSMLNNTQRKNLEQNWELDCSYGVRGL
ARFRVNVYKDRGTYAACLRALSSKIPNFEKLGLPDVVREMAEKPRGLILVTGPTGSGKTTTLAAMIDLINRTRAEHILTI
EDPIEFVYEPLKSLIHQRQLGEDTKSFANALRAALREDPDIILVGEMRDLETISLAISAAETGHLVFGTLHTSSAAQTVD
RIIDVFPAEKQTQVRVQLSNSLVAVFSQTLVPKKNPKPGEYGRVMAQEIMIVTPAIANLIREGKTAQIYSAIQTGGKLGM
QTLEKVLADQYKSGLITFESAMSKTSRPDELQRLIGNAPAGAAAQAGAMRH
MELMIEDLMEQLIEMGGSDLHLTAGLPPYFRISGKLQPIGDEALTAEECQRLIFSMLNNTQRKNLEQNWELDCSYGVRGL
ARFRVNVYKDRGTYAACLRALSSKIPNFEKLGLPDVVREMAEKPRGLILVTGPTGSGKTTTLAAMIDLINRTRAEHILTI
EDPIEFVYEPLKSLIHQRQLGEDTKSFANALRAALREDPDIILVGEMRDLETISLAISAAETGHLVFGTLHTSSAAQTVD
RIIDVFPAEKQTQVRVQLSNSLVAVFSQTLVPKKNPKPGEYGRVMAQEIMIVTPAIANLIREGKTAQIYSAIQTGGKLGM
QTLEKVLADQYKSGLITFESAMSKTSRPDELQRLIGNAPAGAAAQAGAMRH
Nucleotide
Download Length: 1116 bp
>NTDB_id=568209 KIK02_RS17450 WP_233743848.1 3748237..3749352(-) (pilT) [Leptodesmis sichuanensis A121]
ATGGAACTGATGATTGAAGACCTGATGGAGCAGTTAATTGAAATGGGCGGCTCCGACCTGCACCTGACGGCTGGCTTACC
TCCCTACTTTCGCATTAGCGGTAAGCTCCAACCGATTGGAGATGAAGCACTAACAGCCGAAGAGTGCCAGCGGCTCATTT
TCAGTATGTTGAACAACACTCAACGTAAAAACCTGGAGCAAAACTGGGAATTGGACTGTTCCTACGGGGTAAGAGGGCTG
GCTCGGTTCCGGGTCAACGTCTATAAAGACCGGGGCACCTATGCGGCTTGCTTGCGGGCACTCAGTTCTAAAATTCCGAA
CTTCGAGAAGTTGGGATTGCCGGATGTGGTGCGGGAAATGGCAGAGAAACCCAGGGGCTTGATTCTTGTGACTGGCCCCA
CCGGATCGGGTAAAACCACTACCCTGGCGGCGATGATCGACCTGATTAACCGGACTCGTGCTGAACACATTCTGACGATC
GAAGATCCGATCGAATTCGTTTACGAACCCCTCAAGAGCCTGATTCACCAGCGTCAATTGGGAGAAGATACGAAAAGCTT
TGCTAACGCTCTCCGGGCGGCTCTGCGGGAAGACCCAGACATTATTCTGGTAGGTGAAATGCGGGACTTAGAGACCATTT
CGCTCGCAATTTCAGCCGCTGAAACGGGCCACCTCGTCTTTGGTACGCTGCACACCAGCTCTGCCGCACAAACCGTAGAC
CGGATCATTGATGTGTTTCCAGCAGAAAAACAAACTCAGGTACGGGTGCAGCTTTCTAACTCTCTGGTAGCTGTCTTTAG
CCAAACTCTGGTGCCGAAGAAGAATCCCAAGCCGGGAGAGTATGGACGGGTCATGGCTCAAGAAATTATGATTGTCACTC
CCGCTATTGCCAACCTGATTCGGGAAGGAAAAACCGCCCAAATTTATTCAGCCATTCAAACTGGGGGTAAATTGGGTATG
CAAACTTTGGAGAAAGTATTGGCCGATCAATACAAGTCCGGCTTAATTACGTTTGAGTCAGCCATGTCTAAAACCTCCCG
TCCGGATGAACTTCAGCGGCTGATTGGTAATGCACCTGCAGGGGCAGCAGCTCAGGCAGGGGCGATGCGCCACTAA
ATGGAACTGATGATTGAAGACCTGATGGAGCAGTTAATTGAAATGGGCGGCTCCGACCTGCACCTGACGGCTGGCTTACC
TCCCTACTTTCGCATTAGCGGTAAGCTCCAACCGATTGGAGATGAAGCACTAACAGCCGAAGAGTGCCAGCGGCTCATTT
TCAGTATGTTGAACAACACTCAACGTAAAAACCTGGAGCAAAACTGGGAATTGGACTGTTCCTACGGGGTAAGAGGGCTG
GCTCGGTTCCGGGTCAACGTCTATAAAGACCGGGGCACCTATGCGGCTTGCTTGCGGGCACTCAGTTCTAAAATTCCGAA
CTTCGAGAAGTTGGGATTGCCGGATGTGGTGCGGGAAATGGCAGAGAAACCCAGGGGCTTGATTCTTGTGACTGGCCCCA
CCGGATCGGGTAAAACCACTACCCTGGCGGCGATGATCGACCTGATTAACCGGACTCGTGCTGAACACATTCTGACGATC
GAAGATCCGATCGAATTCGTTTACGAACCCCTCAAGAGCCTGATTCACCAGCGTCAATTGGGAGAAGATACGAAAAGCTT
TGCTAACGCTCTCCGGGCGGCTCTGCGGGAAGACCCAGACATTATTCTGGTAGGTGAAATGCGGGACTTAGAGACCATTT
CGCTCGCAATTTCAGCCGCTGAAACGGGCCACCTCGTCTTTGGTACGCTGCACACCAGCTCTGCCGCACAAACCGTAGAC
CGGATCATTGATGTGTTTCCAGCAGAAAAACAAACTCAGGTACGGGTGCAGCTTTCTAACTCTCTGGTAGCTGTCTTTAG
CCAAACTCTGGTGCCGAAGAAGAATCCCAAGCCGGGAGAGTATGGACGGGTCATGGCTCAAGAAATTATGATTGTCACTC
CCGCTATTGCCAACCTGATTCGGGAAGGAAAAACCGCCCAAATTTATTCAGCCATTCAAACTGGGGGTAAATTGGGTATG
CAAACTTTGGAGAAAGTATTGGCCGATCAATACAAGTCCGGCTTAATTACGTTTGAGTCAGCCATGTCTAAAACCTCCCG
TCCGGATGAACTTCAGCGGCTGATTGGTAATGCACCTGCAGGGGCAGCAGCTCAGGCAGGGGCGATGCGCCACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
55.043 |
93.531 |
0.515 |
| pilT | Pseudomonas aeruginosa PAK |
55.043 |
93.531 |
0.515 |
| pilT | Acinetobacter baylyi ADP1 |
54.179 |
93.531 |
0.507 |
| pilT | Acinetobacter nosocomialis M2 |
53.314 |
93.531 |
0.499 |
| pilT | Acinetobacter baumannii D1279779 |
53.314 |
93.531 |
0.499 |
| pilT | Acinetobacter baumannii strain A118 |
53.314 |
93.531 |
0.499 |
| pilT | Legionella pneumophila strain Lp02 |
53.333 |
92.992 |
0.496 |
| pilT | Legionella pneumophila strain ERS1305867 |
53.333 |
92.992 |
0.496 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
50.42 |
96.226 |
0.485 |
| pilT | Neisseria meningitidis 8013 |
52.507 |
91.375 |
0.48 |
| pilT | Neisseria gonorrhoeae MS11 |
52.212 |
91.375 |
0.477 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
51.471 |
91.644 |
0.472 |
| pilT | Vibrio cholerae strain A1552 |
51.471 |
91.644 |
0.472 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.171 |
94.609 |
0.38 |