Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AVAEIV_RS07630 Genome accession   NZ_CP092752
Coordinates   1592243..1592875 (+) Length   210 a.a.
NCBI ID   WP_302228521.1    Uniprot ID   -
Organism   Azotobacter vinelandii strain AEIV     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1587243..1597875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVAEIV_RS07610 (AVAEIV_001520) lolD 1587328..1588026 (+) 699 WP_061288828.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  AVAEIV_RS07615 (AVAEIV_001521) - 1588029..1589273 (+) 1245 WP_302228520.1 lipoprotein-releasing ABC transporter permease subunit -
  AVAEIV_RS07620 (AVAEIV_001522) - 1589298..1589825 (-) 528 WP_012700107.1 DUF2062 domain-containing protein -
  AVAEIV_RS07625 (AVAEIV_001523) comA 1589961..1592171 (+) 2211 WP_156483617.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AVAEIV_RS07630 (AVAEIV_001524) exbB 1592243..1592875 (+) 633 WP_302228521.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AVAEIV_RS07635 (AVAEIV_001525) - 1592872..1593300 (+) 429 WP_012700110.1 ExbD/TolR family protein -
  AVAEIV_RS07640 (AVAEIV_001526) lpxK 1593300..1594301 (+) 1002 WP_302228522.1 tetraacyldisaccharide 4'-kinase -
  AVAEIV_RS07645 (AVAEIV_001527) - 1594362..1594547 (+) 186 WP_012700112.1 Trm112 family protein -
  AVAEIV_RS07650 (AVAEIV_001528) kdsB 1594544..1595308 (+) 765 WP_302228523.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AVAEIV_RS07655 (AVAEIV_001529) - 1595308..1595772 (+) 465 WP_012700114.1 low molecular weight protein-tyrosine-phosphatase -
  AVAEIV_RS07660 (AVAEIV_001530) murB 1595769..1596788 (+) 1020 WP_012700115.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22735.80 Da        Isoelectric Point: 7.2467

>NTDB_id=568108 AVAEIV_RS07630 WP_302228521.1 1592243..1592875(+) (exbB) [Azotobacter vinelandii strain AEIV]
MWELVKAGGWMMLPIVLCSVVALAIIIERLWSLRPGRVTPPNLLGQVWRWIQDKQLNGDKLKELRAGSPLGQILAAGLAN
SKHGREVMKECIEEAAARVIHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANASQLAGGISTALITTAA
GLFVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEVLQGDREVDLNGGRA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=568108 AVAEIV_RS07630 WP_302228521.1 1592243..1592875(+) (exbB) [Azotobacter vinelandii strain AEIV]
GTGTGGGAGCTTGTCAAAGCGGGCGGCTGGATGATGCTGCCGATCGTTCTCTGTTCCGTCGTCGCCCTCGCCATCATCAT
CGAGCGTCTCTGGAGCCTCCGGCCTGGCCGGGTGACTCCGCCGAATCTGCTCGGACAGGTCTGGCGCTGGATACAGGACA
AGCAACTGAATGGCGACAAGCTCAAGGAACTGCGGGCGGGTTCCCCGCTGGGACAGATCCTCGCGGCGGGGCTGGCCAAT
TCCAAGCATGGCCGGGAGGTCATGAAGGAGTGCATCGAGGAAGCGGCGGCGCGCGTCATCCATGATCTGGAGCGCTACCT
CAATGCGCTCGGTACCATCGCCGGCATCGCCCCCTTGCTCGGTTTGCTCGGCACCGTGCTGGGCATGATCGAGATTTTCA
GCAGTTTCATGGGGTCCGGGATGGCCAATGCCTCGCAGCTCGCCGGCGGTATCTCCACGGCGCTGATCACCACCGCCGCC
GGTCTGTTCGTGGCGATTCCCGCGCTGTTCTTCCATCGTTATCTGCAACGGCGCGTCGATGAACTGGTGGTCGGCATGGA
ACAGGAGGCGATCAAGCTGGTGGAGGTGCTGCAGGGCGATCGCGAGGTCGATCTCAACGGGGGAAGGGCGTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

100

0.848