Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   QS27_RS03755 Genome accession   NZ_CP074262
Coordinates   778627..779607 (+) Length   326 a.a.
NCBI ID   WP_023202164.1    Uniprot ID   A0A5I4NRB9
Organism   Salmonella enterica subsp. enterica serovar Livingstone strain CFSAN024717     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 773627..784607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QS27_RS03725 (QS27_03710) - 774205..775212 (+) 1008 WP_000252196.1 DUF1202 domain-containing protein -
  QS27_RS03730 (QS27_03715) hemW 775303..776439 (-) 1137 WP_023138753.1 radical SAM family heme chaperone HemW -
  QS27_RS03735 (QS27_03720) - 776432..777025 (-) 594 WP_001174769.1 XTP/dITP diphosphatase -
  QS27_RS03740 (QS27_03725) yggU 777033..777323 (-) 291 WP_001277203.1 DUF167 family protein YggU -
  QS27_RS03745 (QS27_03730) - 777320..777886 (-) 567 WP_001094848.1 YggT family protein -
  QS27_RS03750 (QS27_03735) - 777905..778609 (-) 705 WP_000997790.1 YggS family pyridoxal phosphate-dependent enzyme -
  QS27_RS03755 (QS27_03740) pilT 778627..779607 (+) 981 WP_023202164.1 type IV pilus twitching motility protein PilT Machinery gene
  QS27_RS03760 (QS27_03745) - 779740..780426 (+) 687 WP_000098325.1 IclR family transcriptional regulator -
  QS27_RS03765 (QS27_03750) ruvX 780473..780889 (-) 417 WP_000017096.1 Holliday junction resolvase RuvX -
  QS27_RS03770 (QS27_03755) - 780889..781452 (-) 564 WP_001053171.1 YqgE/AlgH family protein -
  QS27_RS03775 (QS27_03760) gshB 781668..782615 (-) 948 WP_001650640.1 glutathione synthase -
  QS27_RS03780 (QS27_03765) rsmE 782635..783366 (-) 732 WP_023203985.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  QS27_RS03785 (QS27_03770) endA 783443..784150 (-) 708 WP_039589307.1 deoxyribonuclease I -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36124.34 Da        Isoelectric Point: 7.5355

>NTDB_id=563969 QS27_RS03755 WP_023202164.1 778627..779607(+) (pilT) [Salmonella enterica subsp. enterica serovar Livingstone strain CFSAN024717]
MNMEEIVTLSVKHNVSDLHLCNAWPARWRKQGRMEIAPFTAPDVDRLLLDWLNDAQQYQWRTHGQLDFAVSLSGTRRLRA
SAFTHQQGTSLALRLLPERCPDLAEIQTPPIVPALLASENGLILVTGATGCGKSTTLAAMVGHLNQHADKHILTLEDPIE
YRYTSKRCLIQQREIGQHCATFAAGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKEPVRSQLAGSLRAVLSQKLEVDRQDGRVALFELLINTPATGNLIREGKLHQLAHVIQTGQQQGMMTFAQSAQWR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=563969 QS27_RS03755 WP_023202164.1 778627..779607(+) (pilT) [Salmonella enterica subsp. enterica serovar Livingstone strain CFSAN024717]
ATGAATATGGAAGAAATTGTGACGCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGTAACGCCTGGCCTGCGCG
ATGGCGCAAACAAGGACGCATGGAGATCGCGCCTTTTACCGCGCCTGATGTCGACAGGCTTCTGCTTGATTGGCTTAATG
ACGCGCAGCAATATCAGTGGCGAACGCACGGCCAGCTTGATTTCGCCGTCTCGCTGTCTGGCACGCGGCGCCTGCGCGCC
AGTGCGTTCACACATCAACAGGGAACGTCGCTGGCGCTACGGCTATTGCCCGAGCGTTGTCCTGATCTGGCGGAAATCCA
GACGCCGCCGATAGTACCCGCACTGCTTGCCAGCGAGAACGGACTGATTCTGGTCACTGGCGCTACTGGCTGCGGGAAAT
CCACCACGCTGGCGGCGATGGTGGGACATCTTAATCAACATGCCGATAAACATATCCTGACGCTGGAAGATCCTATTGAG
TACCGTTACACCAGCAAGCGTTGCCTGATACAGCAGCGGGAAATCGGCCAGCATTGCGCCACTTTTGCCGCCGGGCTGCG
CGCAGCGTTACGTGAAGATCCCGATGTCATTTTACTGGGAGAGCTGCGTGACAGCGAGACCATTCGCCTGGCGCTGACGG
CGGCGGAAACGGGGCATCTGGTACTGGCAACCCTGCATACTCGCGGTGCGGCGCAGGCGGTGGAAAGATTAGTGGATAGT
TTTCCGGCGCAGGAAAAAGAACCGGTACGCAGTCAACTGGCGGGTAGTCTGCGCGCTGTACTATCGCAAAAACTGGAGGT
CGACAGACAGGATGGGCGCGTGGCGTTGTTTGAATTACTGATTAATACGCCAGCCACAGGGAATTTGATCCGTGAAGGCA
AACTCCATCAGTTGGCCCACGTGATACAAACCGGGCAGCAGCAGGGGATGATGACATTCGCCCAGAGCGCGCAATGGCGT
CAGGCGCAGGGACGACTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(77-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I4NRB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

48.624

100

0.488
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.624

100

0.488
  pilT Neisseria meningitidis 8013

47.256

100

0.475
  pilT Neisseria gonorrhoeae MS11

46.951

100

0.472
  pilT Acinetobacter baumannii strain A118

44.954

100

0.451
  pilT Acinetobacter baumannii D1279779

44.954

100

0.451
  pilT Acinetobacter baylyi ADP1

44.954

100

0.451
  pilT Pseudomonas aeruginosa PAK

44.954

100

0.451
  pilT Pseudomonas stutzeri DSM 10701

44.648

100

0.448
  pilT Acinetobacter nosocomialis M2

44.648

100

0.448
  pilT Legionella pneumophila strain Lp02

44.654

97.546

0.436
  pilT Legionella pneumophila strain ERS1305867

44.654

97.546

0.436
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

38.558

97.853

0.377
  pilU Pseudomonas stutzeri DSM 10701

36.336

100

0.371